Table 7.
miRNAs and target genes annotation in Larix olgensis
| miRNA ID | miRNA | Target gene ID | Target gene annotation | Reference species |
|---|---|---|---|---|
| conservative_c67876.graph_c0_42013 | miR160 | c79046.graph_c0 | auxin response factor 16 | Pinus massoniana |
| c47433.graph_c0 | putative auxin response factor 10/16/17 | Cycas rumphii | ||
| c67876.graph_c0 | hypothetical protein CCACVL1_17746 | Corchorus capsularis | ||
| conservative_c100220.graph_c0_21 | miR164 | c82138.graph_c0 | Carboxyl transferase | Macleaya cordata |
| c51789.graph_c0 | cup-shaped cotyledon | Picea abies | ||
| c100220.graph_c0 | ABC transporter ATP-binding protein | Archaeoglobus veneficus | ||
| conservative_c81519.graph_c0_113869 | miR166–1 | c75192.graph_c0 | class III HD-Zip protein | Pinus taedas |
| c81519.graph_c0 | unknown | Picea sitchensis | ||
| conservative_c101915.graph_c0_183 | miR166–2 | c101915.graph_c0 | DEAD/DEAH box helicase | Pedobacter sp. KBW06 |
| conservative_c53169.graph_c0_14321 | miR396–1 |
c53169.graph_c0; c76194.graph_c0; c84439.graph_c0; |
No | |
| c80217.graph_c0 | hypothetical protein COLO4 | Corchorus olitorius | ||
| conservative_c84439.graph_c0_145702 | miR396–2 |
c76194.graph_c0; c84439.graph_c0 |
No | |
| c85259.graph_c0 | mannitol dehydrogenase | Glonium stellatum | ||
| c75801.graph_c0 | unnamed protein product | Arabidopsis halleri | ||
| conservative_c79262.graph_c0_97269 | miR950–1 |
c72897.graph_c0; c83878.graph_c0; c79262.graph_c0; |
No | |
| c70968.graph_c0 | unknown | Picea sitchensis | ||
| c69006.graph_c0 | putative TIR-NBS-LRR protein | Pinus monticola | ||
| unconservative_c72897.graph_c0_60887 | miR950–2 | c60781.graph_c0 | unknown | Picea sitchensis |
|
c79262.graph_c0; c83878.graph_c0; c72897.graph_c0; |
No | |||
| c83910.graph_c0 | NB-ARC | Pinus tabuliformis | ||
| c79134.graph_c0 | putative TIR-NBS-LRR protein | Pinus monticola |
Note:target genes annotation was based on other species in Nr, Swissprot, Pfam database. “No” indicated no alignment results