Table 3.
Conserved bacterial OTUs/ASVs with highly similar sequences to other coral microbiomes
| OTU/ASV | Assignment UCLUST | Corals with similar bacterial sequences | Accession number | Percent identity |
|---|---|---|---|---|
|
4447394/4462014 ASV_50, ASV_163, ASV_1083, ASV_1446, ASV_936, ASV_680, ASV_1526, ASV_1089 |
Actinobacteria: family Propionibacteriaceae, genus Propionibacterium♣ | Acropora palmata | EU861208.1 | 98–100 |
| Fungia granulosa | DQ097293.1 | 95–100 | ||
| Lophelia pertusa | AM911348.2 | 98–100 | ||
| Orbicella annularis | DQ200498.1 | 99–100 | ||
| Orbicella faveolata | JQ516491.1 | 98–100 | ||
| Orbicella faveolata | JQ516688.1 | 99 | ||
| Orbicella faveolata | JQ516384.1 | 97–98 | ||
| Pocillopora meandrina | EU249959.1 | 97–99 | ||
| Pocillopora meandrina | EU249977.1 | 97–99 | ||
| Porites compressa | FJ930453.1 | 98 | ||
| Porites lutea | KF179755.1 | 99 | ||
| Porites lutea | KP305502.1 | 98–100 | ||
| Porites lutea | KP305839.1 | 98–99 | ||
| Siderastrea stellata | JF835676.1 | 97–98 | ||
| “Coral” | KY393360.1 | 98–100 | ||
| “Coral” | KY393364.1 | 97–98 | ||
|
245163 ASV_58, ASV_185, ASV_407, ASV_75, ASV_377 |
Planctomycetes: family Pirellulaceae | Muricea elongata | DQ917853.1 | 98–100 |
|
1915223 ASV_116, ASV_127, ASV_85, ASV_373, ASV_178, ASV_2905, ASV_2832 |
Planctomycetes: family Pirellulaceae | Astrangia poculata | PRJNA380119 | 99 |
| Gorgonia ventilina | GU118476.1 | 99 | ||
| Orbicella annularis | DQ200559.1 | 99 | ||
| Stylophora pistillata | KC669264.1 | 99 | ||
|
44008871 ASV_90, ASV_234, ASV_110, ASV_469 |
Planctomycetes: family Pirellulaceae | Pocillopora meandrina | EU249980.1 | 98–99 |
|
4483490 ASV_168, ASV_2169, ASV_1531, ASV_3865, ASV_2609 |
Betaproteobacteria: family Comamonadaceae, genus Acidovorax♣ | Porites cylindrica | GQ413900.1 | 97–99 |
| Siderastrea stellata | JF835733.1 | 97–99 | ||
| Siderastrea stellata | JF835697.1 | 98–99 | ||
| Siderastrea stellata | JF835673.1 | 97–98 | ||
| Siderastrea stellata | JF835695.1 | 98 | ||
| Stephanocoenia intersepta | KC190250.1 | 99 | ||
| Stephanocoenia intersepta | KC190258.1 | 99 | ||
| Tubastraea coccinea | JF925026.1 | 98–100 | ||
|
4475561 ASV_53 |
Alphaproteobacteria: family Bradyrhizobiaceae♣ | Acropora cervicornis | KC737030.1 | 99 |
| Acropora cervicornis | GU117999.1 | 99 | ||
| Acropora palmata | GU118021.1 | 99 | ||
| Gorgonia ventilina | GU118506.1 | 99 | ||
| Porites sp. | DQ309378.1 | 100 | ||
| Pseudodiploria strigosa | GU118187.1 | 99 | ||
|
156342 ASV_11 |
Alphaproteobacteria: order Kiloniellales | Bamboo coral | DQ395873.1 | 99 |
| DQ395762.1 | 99 | |||
| DQ395662.1 | 99 | |||
| DQ395906.1 | 98 | |||
|
New.CleanUp.ReferenceOTU8 ASV_112 |
Epsilonproteobacteria: order Campylobacterales | Acropora cervicornis | GU117990.1 | 96 |
|
New.ReferenceOTU21 ASV_38 |
Gammaproteobacteria: family Moraxellaceae, genus Acinetobacter♣ | “Coral” | MH744724.1 | 96 |
|
4455242 ASV_72 |
Gammaproteobacteria: family Vibrionaceae | Alcyonium digitatum | KT583560.1 | 99 |
| Alcyonium digitatum | KT583432.1 | 99 | ||
| Corallium rubrum | HG942391.1 | 99 | ||
| Eunicella labiata | MF461381.1 | 100 | ||
| Eunicella labiata | MF461377.1 | 99 | ||
| Leptogorgia sp. | MG099530.1 | 99 | ||
| Lophelia pertusa | HQ640762.1 | 99 | ||
| Lophelia pertusa | HQ640866.1 | 99 | ||
| Oculina patagonica | KF577097.1 | 99 | ||
| Porites astreoides | MF600122.1 | 100 | ||
| Pseudoptergorgia sp. | GQ406789.1 | 99 | ||
|
226495 ASV_75 |
Planctomycetes: family Pirellulaceae | Muricea elongata | DQ917853.1 | 100 |
|
New.ReferenceOTU66 ASV_47, ASV_3281, ASV_186, ASV_587, ASV_139, ASV_821, ASV_2980 |
Gammaproteobacteria: family Moraxellaceae, genus Acinetobacter♣ | Madracis decactis | KY914393.1 | 98–100 |
| Pocillopora damicornis | AY700608.1 | 98–99 | ||
| Porites sp. | KM079057.1 | 98–99 | ||
| Tubastraea sp. | KY914396.1 | 98–100 | ||
| Tubastraea sp. | KY914208.1 | 98–99 | ||
| Turbinaria mesenterina | EU276980 | 98–100 | ||
|
New.ReferenceOTU53 ASV_164, ASV_905, ASV_196, ASV_463, ASV_409, ASV_305, ASV_2162, ASV_1987, ASV_1521, ASV_2226 |
Gammaproteobacteria: family Pseudomonadaceae, genus Pseudomonas♣ | Platygyra carnosus | JF411506.1 | 98–100 |
| Tubastraea sp. | KY914202.1 | 98–100 | ||
|
4307347 ASV_40, ASV_4069, ASV_1562, ASV_3638, ASV3611 |
Alphaproteobacteria: family Methylobacteriaceae♣ | Lophelia pertusa | AM911405.1 | 99–100 |
| Orbicella faveolata | JQ515453.1 | 99 | ||
| Porites compressa | FJ930589.1 | 96–97 | ||
|
4457268 ASV_62 |
Gammaproteobacteria: family Enterobacteriaceae♣ | Acropora desalwii | KJ616368 | 96–97 |
| Fungia granulosa | DQ097299.1 | 97 | ||
| Orbicella faveolata | JQ516590.1 | 98–99 | ||
| Orbicella faveolata | JQ516581.1 | 99–100 | ||
| Orbicella faveolata | JQ516578.1 | 98–99 | ||
| Orbicella faveolata | JQ516577.1 | 98–99 | ||
| Orbicella faveolata | FJ202675.1 | 99–100 | ||
| Pocillopora meandrina | EU249962.1 | 99–100 | ||
| Porites compressa | FJ930291.1 | 99–100 | ||
| Tubastrea micrantha | KJ616365.1 | 96–97 | ||
|
4371886 ASV_17, ASV1451, ASV_479 |
Gammaproteobacteria: family Xanthomonadaceae, genus Lysobacter | Porites sp. | KM079054.1 | 99–100 |
|
4461879 ASV_259, ASV_2197, ASV_406, ASV_2041 |
Gammaproteobacteria: family Xanthomonadaceae | Acropora digitifera | JN248444.1 | 97–100 |
| Acropora digitifera | JN248443.1 | 97–99 | ||
| Acropora digitifera | JN248442.1 | 97–100 | ||
| Orbicella faveolata | JQ516453.1 | 96–99 | ||
| Pocillopora damicornis | AY700609.1 | 97–99 | ||
| Pocillopora meandrina | EU249965.1 | 98–100 | ||
| Porites sp. | DQ309377.1 | 97–100 | ||
| Sideastrea siderea | JF792079.1 | 98–100 | ||
| Sideastrea siderea | JF792069.1 | 98–100 | ||
| Siderastrea stellata | JF835651.1 | 97–99 | ||
| Tubastraea coccinea | JF925027.1 | 97–99 | ||
|
New.ReferenceOTU4 ASV_59, ASV_1406, ASV_593, ASV_200, ASV_318, ASV_147 |
Alphaproteobacteria: order Kiloniellales | Bamboo coral | DQ395873.1 | 98–100 |
| DQ395762.1 | 98–100 | |||
| DQ395662.1 | 98–100 | |||
| DQ395906.1 | 98–100 | |||
| ASV_21 | Firmicutes: family Bacillaceae, genus Bacillus♣ | Acropora digitifera | EU660355.1 | 99 |
| Acropora digitifera | EU660327.1 | 99 | ||
| Acropora palmata | JF346760.1 | 97 | ||
| Alcyonium digitatum | KT583461.1 | 98 | ||
| Alcyonium digitatum | KT583427.1 | 97 | ||
| Eunicea succinea | MG099636.1 | 98 | ||
| Madracis decactis | KY914242.1 | 98 | ||
| Madracis decactis | KY914116.1 | 97 | ||
| Mussismilia sp. | JN106654.1 | 97 | ||
| Platygyra carnosus | JF411582.1 | 97 | ||
| Pocillopora sp. | MK418934.1 | 98 | ||
| Pocillopora sp. | MK418932.1 | 98 | ||
| Pocillopora sp | MK418942.1 | 97 | ||
| Pocillopora meandrina | EU249974.1 | 97 | ||
| ASV_140 | Alphaproteobacteria: family Sphingomonadaceae, genus Sphingobium♣ | Acropora cervicornis | KC737046.1 | 97 |
| Lophelia pertusa | AM911354.2 | 100 | ||
| Lophelia pertusa | AM911424.1 | 100 | ||
| Siderastrea stellata | JF835729.1 | 100 | ||
| Siderastrea stellata | JF835707.1 | 99 | ||
| Siderastrea stellata | HM216535.1 | 98 | ||
| Tubastraea sp. | KY913986.1 | 97 |
Bold accession numbers indicated a cultured isolate
♣Bacterial families/genera that are commonly found as kit contaminants