Table 1.
PGP dock | PGP TM3 | PGP TM7 | ARB TM3 | ARB TM7 | SAL TM3 | SAL TM7 | |
---|---|---|---|---|---|---|---|
Precisiona | 0.0 | 0.83 | 0.83 | 0.80 | 0.83 | 1.00 | 1.00 |
Recallb | 0.0 | 0.83 | 0.83 | 0.66 | 0.83 | 0.66 | 0.66 |
Three different ligands are considered (PGP, phenyl-β-D-glucopyranoside; ARB, arbutin; and SAL, salicin), each in two possible binding modes. For PGP, the values of the initial docking pose are also included.
aThe precision of some complexes is lower than 1 because Q177, an experimental non-binding residue (see Supplementary Table S2), interacts with the ligand in some of the simulations and thus it is classified as FP.
bNone of the complexes reached a recall value equal to 1 because F240 and/or to I243, experimental binding residues, do not interact with the ligand in some of the simulations and thus they are classified as FNs. Nonetheless, a molecular explanation of their roles can still be suggested (see text).