Table 1.
Properties of the Trichoderma genomes and gene distribution
| Clade | Species | Strain | Genome size (Mbp) | Total genes | Complete-ness (%) | Fragmen-ted (%) | Missing (%) | Orthologs and paralogs |
|---|---|---|---|---|---|---|---|---|
| Longibrachiatum | T. reesei a | QM6a | 32.7 | 9877 | 96.9 | 2.4 | 0.7 | 8090 |
| RUT C30 | 34.2 | 10877 | ||||||
| T. longibrachiatum | ATCC18648 | 31.74 | 10938 | 86.3 | 7.9 | 5.8 | 8229 | |
| T. citrinoviride | TUCIM 6016 | 33.2 | 9737 | 94.1 | 3.1 | 2.8 | 7834 | |
| T. parareesei | CBS125925 | 32.07 | 9292 | 95.3 | 3.7 | 1 | 8328 | |
| Harzianum/Virens Clades | T. harzianum | CBS 226.95 | 40.9 | 14095 | 98.1 | 1.4 | 0.5 | 9921 |
| TR257 | 39.4 | 13932 | 97.2 | 2 | 0.8 | 9870 | ||
| T. afroharzianum | T6776 | 39.7 | 11297 | 95.1 | 1.8 | 3.1 | 9541 | |
| T. guizhouense | NJAU4742 | 38.8 | 11297 | 98.3 | 1.2 | 0.5 | 9246 | |
| T. virens | Gv29–8 | 40.52 | 12427 | 97.8 | 1.9 | 0.3 | 9795 | |
| Trichoderma | T. atroviride | IMI 206040 | 36.4 | 11863 | 97.5 | 2.1 | 0.4 | 9301 |
| T. gamsii | T6085 | 37.9 | 10709 | 94.1 | 2.1 | 3.8 | 8825 | |
| T. asperellum | CBS433.97 | 37.66 | 12586 | 97.9 | 1.4 | 0.7 | 9143 | |
| T. hamatum | GD12 | 38.43 | 10520 | 98.6 | 0.7 | 0.7 | 9030 |
a numbers show data (from left to right) obtained in this paper and by Li et al. [27] (if available)