Table 2.
Summary of SNPs showing ΔSNP-index from 0.6 to 1 within the candidate region
| ΔSNP-index | Position | Ref | Alt | Mutated gene | Mutation Type | Gene Annotation |
|---|---|---|---|---|---|---|
| 0.95 | 8,887,787 | C | T | BGIOSGA024510 | Missense (P to L) | metal transporter Nramp5 |
| 0.92 | 9,174,237 | C | T | BGIOSGA024502 | Intron mutation | GHD7 protein |
| 0.57 | 2,570,339 | G | A | BGIOSGA024818 | 5′-UTR mutation | Hypothetical protein |
| 0.57 | 18,066,507 | C | A | BGIOSGA025813 | 3′-UTR mutation | Hypothetical protein |
| 0.57 | 19,252,302 | T | A | BGIOSGA025883 | Missense (R to W) | Hypothetical protein |
| 0.97 | 7,743,062 | G | A | None | / | / |
| 0.84 | 6,051,970 | T | A | None | / | / |
| 0.76 | 16,841,982 | G | T | None | / | / |
| 0.6 | 4,343,274 | G | A | None | / | / |
identified by MutMap analysis
Ref: reference base in WT, Alt: altered base in the lcd1 mutant