Table 3.

Comparison of gene expressions related to Cd transmembrane transport between lcd1 and WT roots under Cd exposure using RNA-seq analysis

Gene ID	Gene locus	Gene names	lcd1 FPKM	WT FPKM	Fold change (lcd1/WT)
OsNRAMP family
BGIOSGA025476	Os07g0258400	OsNRAMP1	6.20	19.44	0.33
BGIOSGA011239	Os03g0208500	OsNRAMP2	19.56	24.24	0.83
BGIOSGA020686	Os06g0676000	OsNRAMP3	40.09	62.85	0.66
BGIOSGA007187	Os02g0131800	OsNRAMP4	217.56	147.96	1.51
BGIOSGA024510	Os07g0257200	OsNRAMP5	47.21	43.86	1.11
BGIOSGA001567	Os01g0503400	OsNRAMP6	12.06	14.16	0.88
BGIOSGA035937	Os12g0581600	OsNRAMP7	9.67	12.98	0.77
OsZIP family
BGIOSGA010092	Os03g0667500	OsIRT1	1.99	2.49	0.80
BGIOSGA010094	Os03g0667300	OsIRT2	0.02	0.02	1.06
BGIOSGA000021	Os01g0972200	OsZIP1	0.26	0.23	1.10
BGIOSGA010542	Os03g0411800	OsZIP2	70.14	93.40	0.75
BGIOSGA014364	Os04g0613000	OsZIP3	0.91	1.12	0.82
BGIOSGA028188	Os08g0207401	OsZIP4	44.19	27.47	1.61
BGIOSGA020032	Os05g0472700	OsZIP5	72.79	46.94	1.55
BGIOSGA018749	Os05g0164800	OsZIP6	58.52	60.36	0.97
BGIOSGA019328	Os05g0198400	OsZIP7	91.10	72.76	1.25
BGIOSGA025423	Os07g0232800	OsZIP8	18.26	12.97	1.41
BGIOSGA020030	Os05g0472400	OsZIP9	41.71	14.70	2.84
BGIOSGA023103	Os06g0566201	OsZIP10	22.26	9.91	2.25
BGIOSGA018313	Os05g0316100	OsZIP11	39.91	34.43	1.16
OsHMA family
BGIOSGA020639	Os06g0690700	OsHMA1	12.91	11.42	1.13
BGIOSGA020589	Os06g0700700	OsHMA2	101.99	95.74	1.07
BGIOSGA024568	Os07g0232900	OsHMA3	12.45	9.80	1.27
BGIOSGA007732	Os02g0196600	OsHMA4	105.93	82.41	1.29
BGIOSGA016903	Os04g0556000	OsHMA5	42.69	37.76	1.13
BGIOSGA007052	Os02g0172600	OsHMA6	19.51	21.01	0.93
BGIOSGA028879	Os08g0486100	OsHMA7	20.66	17.04	1.21
BGIOSGA011343	Os03g0178100	OsHMA8	12.85	11.85	1.08
BGIOSGA020720	Os06g0665800	OsHMA9	74.27	68.57	1.08
OsABC transporter family
BGIOSGA001233	Os01g0609300	OsABCG36/OsPDR9	0.34	2.70	0.13
BGIOSGA004262	Os01g0696600	OsABCB4	11.83	26.58	0.45
BGIOSGA028618	Os08g0398300	OsABCA7	3.15	7.53	0.42
BGIOSGA015573	Os04g0209200	OsABCC14	2.12	6.01	0.35