Table 5.

Endogenous retrotransposon sites in lines analyzed by NGS for transposition in pollen

Retro-transposon	Line*	No. endogenous sites	No. sites with B73 hits†	No. sites in genes‡	No. sites in IGRs§	No. sites in repetitive DNA¶
Hopscotch	W22 Bz-McC	5	4	0	2	2
Bs2	W22 Bz-B73	5	5	2	3	0
Magellan	W22 Bz-B73	7	6	4	1	1

^*Line where retrotransposon is active.

^†>85% Identity.

^‡±500 bp.

^§Intergenic regions.

^¶≥Five copies.