Table 6.

Retrotransposon insertion sites identified by NGS in pollen progeny of active lines

Retrotransposon	Line*	No. new sites	No. sites with B73 hits†	No. sites in genes‡	No. sites in IGRs§	No. sites in repetitive DNA¶
Hopscotch	W22 Bz-McC	18	16	12	4	0
Bs2	W22 Bz-B73	300	270	187	73	10
Magellan	W22 Bz-B73	91	84	65	17	2

^*Line where retrotransposon is active.

^†>85% Identity.

^‡±500 bp.

^§Intergenic regions.

^¶≥Five copies.