Table 3. Enriched Go-terms from the shared freshwater eel branch of Fig 4.
| Aspect | GO ID | Term | Annotated | Significant | Expected | FDR |
|---|---|---|---|---|---|---|
| Biological Process | GO:0007264 | small GTPase mediated signal transductio … | 256 | 43 | 22.97 | 0.000064 |
| Biological Process | GO:0045176 | apical protein localization | 3 | 3 | 0.27 | 0.00072 |
| Biological Process | GO:0008045 | motor neuron axon guidance | 10 | 5 | 0.9 | 0.00099 |
| Biological Process | GO:0048514 | blood vessel morphogenesis | 121 | 20 | 10.86 | 0.00257 |
| Biological Process | GO:0000132 | establishment of mitotic spindle orienta … | 8 | 4 | 0.72 | 0.00335 |
| Biological Process | GO:0048596 | embryonic camera-type eye morphogenesis | 11 | 4 | 0.99 | 0.00625 |
| Biological Process | GO:0015991 | ATP hydrolysis coupled proton transport | 20 | 6 | 1.79 | 0.00661 |
| Biological Process | GO:0008333 | endosome to lysosome transport | 2 | 2 | 0.18 | 0.00804 |
| Biological Process | GO:0015031 | protein transport | 284 | 39 | 25.48 | 0.00900 |
| Biological Process | GO:0006886 | intracellular protein transport | 156 | 19 | 14 | 0.00907 |
| Biological Process | GO:0007160 | cell-matrix adhesion | 16 | 5 | 1.44 | 0.01084 |
| Biological Process | GO:0001756 | somitogenesis | 50 | 10 | 4.49 | 0.01200 |
| Biological Process | GO:0060042 | retina morphogenesis in camera-type eye | 37 | 9 | 3.32 | 0.01887 |
| Biological Process | GO:0072358 | cardiovascular system development | 280 | 44 | 25.12 | 0.01905 |
| Biological Process | GO:0040023 | establishment of nucleus localization | 4 | 3 | 0.36 | 0.02262 |
| Biological Process | GO:0009826 | unidimensional cell growth | 3 | 2 | 0.27 | 0.02268 |
| Biological Process | GO:0030326 | embryonic limb morphogenesis | 3 | 2 | 0.27 | 0.02268 |
| Biological Process | GO:0008202 | steroid metabolic process | 34 | 3 | 3.05 | 0.02280 |
| Biological Process | GO:0007179 | transforming growth factor beta receptor … | 13 | 4 | 1.17 | 0.02382 |
| Biological Process | GO:0071840 | cellular component organization or bioge … | 846 | 81 | 75.91 | 0.02822 |
| Biological Process | GO:0048884 | neuromast development | 15 | 4 | 1.35 | 0.02854 |
| Biological Process | GO:0001569 | patterning of blood vessels | 8 | 3 | 0.72 | 0.02858 |
| Biological Process | GO:0016998 | cell wall macromolecule catabolic proces … | 8 | 3 | 0.72 | 0.02858 |
| Biological Process | GO:0046835 | carbohydrate phosphorylation | 8 | 3 | 0.72 | 0.02858 |
| Biological Process | GO:0043473 | pigmentation | 57 | 7 | 5.11 | 0.02863 |
| Biological Process | GO:0060059 | embryonic retina morphogenesis in camera … | 14 | 4 | 1.26 | 0.03104 |
| Biological Process | GO:0001702 | gastrulation with mouth forming second | 23 | 6 | 2.06 | 0.04241 |
| Biological Process | GO:0060034 | notochord cell differentiation | 6 | 3 | 0.54 | 0.04259 |
| Biological Process | GO:0061035 | regulation of cartilage development | 7 | 3 | 0.63 | 0.04260 |
| Biological Process | GO:0009103 | lipopolysaCellular Componentharide biosynthetic process | 4 | 2 | 0.36 | 0.04268 |
| Biological Process | GO:0043114 | regulation of vascular permeability | 4 | 2 | 0.36 | 0.04268 |
| Biological Process | GO:0015721 | bile acid and bile salt transport | 4 | 2 | 0.36 | 0.04268 |
| Biological Process | GO:0006511 | ubiquitin-dependent protein catabolic pr … | 91 | 14 | 8.17 | 0.04728 |
| Biological Process | GO:0030900 | forebrain development | 53 | 10 | 4.76 | 0.04832 |
| Biological Process | GO:0042074 | cell migration involved in gastrulation | 37 | 9 | 3.32 | 0.04885 |
| Cellular Component | GO:0031105 | septin complex | 6 | 4 | 0.54 | 0.00084 |
| Cellular Component | GO:0030018 | Z disc | 10 | 5 | 0.9 | 0.00099 |
| Cellular Component | GO:0031461 | cullin-RING ubiquitin ligase complex | 28 | 8 | 2.52 | 0.00555 |
| Cellular Component | GO:0008290 | F-actin capping protein complex | 2 | 2 | 0.18 | 0.00807 |
| Cellular Component | GO:0005915 | zonula adherens | 2 | 2 | 0.18 | 0.00807 |
| Cellular Component | GO:0005737 | cytoplasm | 1750 | 175 | 157.31 | 0.01734 |
| Cellular Component | GO:0005768 | endosome | 47 | 8 | 4.22 | 0.01771 |
| Cellular Component | GO:0033180 | proton-transporting V-type ATPase V1 do … | 10 | 4 | 0.9 | 0.01913 |
| Cellular Component | GO:0030424 | axon | 7 | 3 | 0.63 | 0.01920 |
| Cellular Component | GO:0000159 | protein phosphatase type 2A complex | 3 | 2 | 0.27 | 0.02275 |
| Cellular Component | GO:0005667 | transcription factor complex | 79 | 12 | 7.1 | 0.02336 |
| Cellular Component | GO:0005912 | adherens junction | 7 | 4 | 0.63 | 0.04255 |
| Cellular Component | GO:0031519 | PcG protein complex | 9 | 4 | 0.81 | 0.04258 |
| Cellular Component | GO:0005890 | sodium:potassium-exchanging ATPase compl … | 4 | 2 | 0.36 | 0.04281 |
| Cellular Component | GO:0043198 | dendritic shaft | 4 | 2 | 0.36 | 0.04281 |
| Cellular Component | GO:0005885 | Arp2/3 protein complex | 4 | 2 | 0.36 | 0.04281 |
| Cellular Component | GO:0005765 | lysosomal membrane | 16 | 4 | 1.44 | 0.04914 |
| Molecular Function | GO:0005525 | GTP binding | 251 | 43 | 22.24 | 1.6e-05 |
| Molecular Function | GO:0043168 | anion binding | 1289 | 142 | 114.24 | 0.0018 |
| Molecular Function | GO:0060089 | molecular transducer activity | 778 | 56 | 68.95 | 0.0078 |
| Molecular Function | GO:0004331 | fructose-2 6-bisphosphate 2-phosphatase … | 2 | 2 | 0.18 | 0.0078 |
| Molecular Function | GO:0045296 | cadherin binding | 2 | 2 | 0.18 | 0.0078 |
| Molecular Function | GO:0046933 | proton-transporting ATP synthase activit … | 10 | 4 | 0.89 | 0.0083 |
| Molecular Function | GO:0004702 | receptor signaling protein serine/threon … | 19 | 7 | 1.68 | 0.0112 |
| Molecular Function | GO:0008242 | omega peptidase activity | 6 | 3 | 0.53 | 0.0113 |
| Molecular Function | GO:0031683 | G-protein beta/gamma-subunit complex bin … | 6 | 3 | 0.53 | 0.0113 |
| Molecular Function | GO:0008013 | beta-catenin binding | 7 | 3 | 0.62 | 0.0185 |
| Molecular Function | GO:0016820 | hydrolase activity acting on acid anhyd … | 38 | 8 | 3.37 | 0.0219 |
| Molecular Function | GO:0004749 | ribose phosphate diphosphokinase activit … | 3 | 2 | 0.27 | 0.0221 |
| Molecular Function | GO:0008601 | protein phosphatase type 2A regulator ac … | 3 | 2 | 0.27 | 0.0221 |
| Molecular Function | GO:0003796 | lysozyme activity | 3 | 2 | 0.27 | 0.0221 |
| Molecular Function | GO:0008146 | sulfotransferase activity | 43 | 10 | 3.81 | 0.0249 |
| Molecular Function | GO:0051287 | NAD binding | 22 | 5 | 1.95 | 0.0298 |
| Molecular Function | GO:0003714 | transcription corepressor activity | 9 | 3 | 0.8 | 0.0388 |
| Molecular Function | GO:0008514 | organic anion transmembrane transporter … | 22 | 5 | 1.95 | 0.0399 |
| Molecular Function | GO:0004872 | receptor activity | 695 | 41 | 61.59 | 0.0495 |
Enriched Go-terms from the duplicated genes shared by freshwater eels. “Aspects” indicates the specific GO-term aspect of each enriched GO-term. “GO ID” indicates the identification number of each enriched GO-term. “Term “indicates the verbal description of each enriched GO-term. “Annotated” indicates the number of GO-terms which are associated with each enriched GO-term. “Significant” indicates the number of GO-terms associated to each enriched GO-term found among the duplicated genes. “Expected” indicates the number of GO-terms expected to be found linked to each enriched GO-term. “FDR” indicates the False Discovery Rate adjusted P-value from the Fisher exact test of enrichment.