Table 3.
Fold change of genes from the “class I MHC-mediated antigen processing and presentation” and “antigen processing: ubiquitination and proteasome degradation” pathways in the transcriptomic analysis of VHSV-exposed rainbow trout RBCs at 4 hpe. Gene expression values were calculated by normalization against unexposed RBCs. Gene P values were <0.001 and FDR P values < 0.05. Gene symbols correspond to homologue Homo sapiens genes identified by sequence homology using Blast2GO.
| Antigen Processing: Ubiquitination and Proteasome Degradation | Class I MHC-Mediated Antigen Processing and Presentation | ||
|---|---|---|---|
| Gene Symbol | Log2 Fold | Gene Symbol | Log2 Fold |
| cul3 | 4.77 | canx | 4.31 |
| keap1 | 7.56 | sec13 | 5.35 |
| psma6 | 5.02 | ikbkb | 5.69 |
| psmb5 | 3.72 | klhl13 | 5.36 |