Table 5.

List of up-regulated (left) and down-regulated (right) identified proteins from the “antigen processing and presentation of peptide antigen via MHC class II”, “proteasome-mediated ubiquitin-dependent protein catabolic process” and “proteasome” pathways. Protein FDR P values were < 0.001. Protein symbols correspond to homologue Homo sapiens proteins identified by sequence homology using Blast2GO.

Antigen Processing and Presentation of Peptide Antigen via MHC Class II				Proteasome-mediated Ubiquitin-Dependent Protein Catabolic Process				Proteasome
Upr. Protein	Log2 Fold	Downr. Protein	Log2 Fold	Upr. Protein	Log2 Fold	Downr. Protein	Log2 Fold	Upr. Protein	Log2 Fold	Downr. Protein	Log2 Fold
ACTR1B	3.37	CAPZB	−2.68	CD2AP	7.50	HSPA5	−6.23	PSMB3	4.44	PSMA1	−5.33
AP2S1	5.75	CLTC	−3.69	DDB1	3.32	PSMA1	−5.33	PSMB6	3.73	PSMA2	−5.43
CLTA	4.51	RAB7A	−4.69	GCLC	4.63	PSMA2	−5.43	PSMC2	2.98	PSMA3	−3.31
DNM2	5.32			HSPA1A	4.74	PSMA3	−3.31	PSMD13	2.26	PSMA4	−4.78
DYNC1H1	5.43			NPLOC4	1.68	PSMA4	−4.78	PSMD2	3.98	PSMA5	−6.15
KIF15	3.89			PLAA	5.08	PSMA5	−6.15	PSMD4	5.83	PSMA6	−6.49
PYCARD	3.28			PSMB3	4.44	PSMA6	−6.49	PSME1	5.73	PSMA8	−5.50
				PSMB6	3.73	PSMA8	−5.50			PSMB1	−4.45
				PSMC2	2.98	PSMB1	−4.45			PSMB2	−5.29
				PSMD13	2.26	PSMB2	−5.29			PSMB4	−3.69
				PSMD2	3.98	PSMB4	−3.69			PSME2	−3.44
				PSMD4	5.83	PSME2	−3.44
				PSME1	5.73	RAD23B	−3.77
				RACK1	3.95	UBC	−5.19
				RAD23A	4.85	UBR2	−11.48
				RPS27A	5.03	VCP	−2.86
				UBB	4.39	WFS1	−10.33
				USP19	8.29
				YOD1	2.95