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Phylogenetic analysis of hobo element fragments extracted from the genomes of D. melanogaster, D. simulans and D. sechellia. Alignments from BLAST output (E cutoff −100) were subjected to phylogenetic analysis with GARLI. Blue indicates D. melanogaster, red indicates D. sechellia and orange indicates D. simulans. The hobo phylogeny shows evidence of a previous wave in D. melanogaster, as well as new proliferation derived from a lineage residing within D. simulans or D. sechellia.
