| ADFVd | Apple dimple fruit viroid | X99487.1 | |
| AFCVd | Apple fruit crinkle viroid | AB429213.1 | |
| AGVd | Australian grapevine viroid | X17101.1 | |
| ASBVd | Avocado sunblotch viroid | X13000.1 | |
| ASSVd | Apple scar skin viroid | X17696.1 | |
| CBVd | Coleus blumei viroid | X97202.1 | |
| X52960.1 | (CBVd-1) | ||
| X95365.1 | (CBVd-2) | ||
| X95364.1 | (CBVd-3) | ||
| CBCVd | Citrus bark cracking viroid | MG457794.1 | |
| CBLVd | Citrus bent leaf viroid | M74065.1 | |
| CVd | Citrus viroid | EF617306.1 | (CVd-V) |
| AB019508.1 | (CVd-VI) | ||
| KX013553.1 | (CVd-VII) | ||
| CCCVd | Coconut cadang-cadang viroid | J02049.1 | |
| CChMVd | Chrysanthemum chlorotic mottle viroid | Y14700.1 | |
| CDVd | Citrus dwarfing viroid | AF184147.1 | |
| CEVd | Citrus exocortis viroid | M34917.1 | |
| CLVd | Columnea latent viroid | X15663.1 | |
| CSVd | Chrysanthemum stunt viroid | AJ001849.1 | |
| CTiVd | Coconut trinangaja viroid | M20731.1 | |
| DLVd | Dahlia latent viroid | MG214159.1 | |
| ELVd | Eggplant latent viroid | AJ536612.1 | |
| GLVd | Grapevine latent viroid | KR605505.1 | |
| GYSVd | Grapevine yellow speckle viroid | X06904.1 | |
| J04348.1 | (GYSVd-1) | ||
| KF916050.1 | (GYSVd-2) | ||
| HLVd | Hop latent viroid | X07397.1 | |
| HSVd | Hop stunt viroid | X00009.1 | |
| IrVd | Iresine viroid | X95734.1 | |
| MPVd | Mexican papita viroid | L78454.1 | |
| PVd | Persimmon viroid | AB366022.1 | |
| AB817729.1 | (PVd2) | ||
| PBCVd | Pear blister canker viroid | D12823.1 | |
| PCFVd | Pepper chat fruit viroid | FJ409044.1 | |
| PLMVd | Peach latent mosaic viroid | M83545.1 | |
| PSTVd | Potato spindle tuber viroid | V01465.1 | |
| RVd | Rubber viroid | HM107844.1 | (RVd-I) |
| TASVd | Tomato apical stunt viroid | K00818.1 | |
| TCDVd | Tomato chlorotic dwarf viroid | AF162131.1 | |
| TPMVd | Tomato planta macho viroid | K00817.1 |