Table 1.
Details of the hop transcription factor (TFs) families identified in this study. The TFs were identified using a combination of the plant TF database (https://plantgrn.noble.org/PlantTFcat/) and HMMER searches using the assembled transcriptome sequences of hop plants infected with Citrus bark cracking viroid (CBCVd).
| Transcription Factor Families | Count | Transcription Factor Families | Count | Transcription Factor Families | Count |
|---|---|---|---|---|---|
| A20-like | 12 | HD-ZIP | 14 | STY-LRP1 | 8 |
| ABTB | 5 | HMG | 12 | SWIB-Plus-3 | 5 |
| AP2-EREBP* | 140 | Homeodomain-LIKE | 9 | TAZ | 2 |
| ARF | 20 | Homeodomain-PHD | 1 | TCP | 16 |
| ARID | 6 | Homeodomain-TALE-BEL | 11 | Tc-PD | 3 |
| ARID-HMG | 3 | Homeodomain-TALE-KNOX | 9 | Tesmin | 2 |
| AS2-LOB | 48 | Homobox-WOX | 82 | TIFY | 12 |
| AUX-IAA | 21 | HSF-type-DNA-binding | 19 | TTF-type(Zn) | 18 |
| B3-Domain | 48 | ISWI | 1 | TUBBY | 8 |
| BED-type(Zn) | 23 | JmjC | 20 | WD40-like | 276 |
| BES/BZR | 8 | JmjC-ARID | 1 | WRKY* | 66 |
| bHLH* | 106 | JmjN | 7 | YEATS | 3 |
| Bromodomain | 22 | JUMONJI | 7 | ZF-HD | 11 |
| BTB-POZ | 32 | Lambda-DB | 4 | Znf-B | 28 |
| BTB-POZ-MATH | 5 | LFY | 1 | Znf-LSD | 7 |
| bZIP* | 64 | LIM | 16 | Grand Total | 3818 |
| C2C2-CO-like | 27 | LisH | 21 | ||
| C2C2-Dof | 26 | MADS-MIKC | 17 | ||
| C2C2-GATA | 24 | MADS-type1 | 30 | ||
| C2C2-YABBY | 8 | MYB* | 16 | ||
| C2H2 | 428 | MYB/SANT | 24 | ||
| C3H | 67 | MYB-HB-like | 218 | ||
| C3H-WRC/GRF | 17 | MYB-related | 1 | ||
| CCHC(Zn) | 893 | NAC* | 74 | ||
| CG1-CAMTA | 5 | Nin-like | 6 | ||
| CHROMO-DOMAIN | 114 | NOZZLE | 1 | ||
| CW-Zn | 6 | PAZ-Argonaute | 11 | ||
| CW-Zn-B3/VAL | 2 | PHD | 107 | ||
| DDT | 7 | PLATZ | 13 | ||
| E2F-DP | 7 | RAV | 4 | ||
| EIL | 6 | RB | 1 | ||
| FAR | 39 | RR-A-type | 31 | ||
| FHA-SMAD | 19 | RR-B-type | 4 | ||
| FYR | 6 | S1Fa-like | 1 | ||
| GAGA-Binding-like | 4 | SAP | 9 | ||
| GARP-G2-like | 6 | SBP | 23 | ||
| GeBP | 2 | SET | 29 | ||
| GRAS | 39 | SNF2 | 41 | ||
| GRF | 7 | SPK | 1 | ||
| Hap2/NF-YA | 9 | ssDNA-binding-TF | 8 | ||
| Hap3/NF-YB | 102 | SSXT | 2 | ||
| HD-SAD | 12 | STAT | 1 | ||
* TFs studied in this communication.