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. 2018 Dec 29;14(9):560–573. doi: 10.6026/97320630014560

Table 1. Summary of the 16S ribosomal RNA gene sequence based metagenomic analysis results of the datasets used in this study.

Country Number of samples used in this study* Average read length Number of reads used in this study^ Average number of reads per sample Number of OTUs Number of genera No of unknown OTUs Reads mapping to known genera (%) Reads mapping to unknown genera (%) ENA Accession Numbers References
Burkina Faso 9 254 173012 19223.56 1257 57 26 91.93039 8.06961 ERP000133 [20]
Egypt 8 253 383613 47951.63 3368 121 81 64.55591 35.44409 PRJNA328966 [58]
China 57 402 245706 4310.632 3551 94 26 70.46069 29.53931 PRJDB1664 [16]
Taiwan 53 402 269446 5083.887 3509 89 24 71.48267 28.51733 PRJDB1664 [16]
Thailand 50 400 326087 6521.74 3922 108 34 71.77727 28.22273 PRJDB1664 [16]
Indonesia 55 401 354766 6450.291 3961 117 39 75.82541 24.17459 PRJDB1664 [16]
Japan 79 403 457678 5793.392 3572 85 29 67.03656 32.96344 PRJDB1664 [16]
India 14 175 15072369 1076598 5660 152 49 76.8114 23.1886 SRP041693, SRP055407, DRA002238 [59]
Malaysia 6 186 4196544 699424 4287 105 34 78.07753 21.92247 SRP079939 [60]
Italy 13 262 205151 15780.85 2347 73 21 57.50687 42.49313 ERP000133 [20]
Spain 40 448 1479424 36985.6 3693 101 37 66.12199 33.87802 PRJNA350839 [61]
Sweden 9 98 2531749 281305.4 5085 95 34 61.0206 38.9794 ERP020401 [62]
Colombia 30 217 513077 17102.57 4030 102 41 53.73231 46.26769 ERP003466 [39]
U.S.A 62 512 2122144 34228.13 4207 107 38 68.82446 31.17554 PRJNA297510 [63]
Argentina 10 483 88490 8849 1470 58 25 69.30452 30.69548 SRP062999 [44]
495 13346887 53919