Table 1.
Raw data, clean data, quality and GC content of 45 transcriptomes from the Acipenser sinensis hypothalamus-pituitary-gonad (HPG) axis in two sex development stages.
| Sample Classification | Samples | Total Raw Reads | Total Clean Reads | Total Clean Nucleotides (nt) | Q20 (Clean data) | GC Content (Clean data) |
|---|---|---|---|---|---|---|
| Individuals of stage I (1 year old) | Asia1h | 72,561,602 | 67,120,606 | 6,040,854,540 | 97.81% | 46.06% |
| Asia1p | 70,982,504 | 66,170,244 | 5,955,321,960 | 97.75% | 46.94% | |
| Asia1s | 52,674,760 | 49,336,672 | 4,440,300,480 | 98.84% | 49.79% | |
| Asia2h | 69,592,162 | 64,500,510 | 5,805,045,900 | 97.83% | 46.02% | |
| Asia2p | 73,903,484 | 68,139,236 | 6,132,531,240 | 97.71% | 46.86% | |
| Asia2s | 67,369,164 | 63,892,914 | 5,750,362,260 | 98.88% | 47.81% | |
| Asia3h | 68,160,832 | 64,051,270 | 5,764,614,300 | 98.47% | 47.22% | |
| Asia3p | 69,409,406 | 63,942,236 | 5,754,801,240 | 97.63% | 46.95% | |
| Asia3s | 69,540,028 | 66,011,416 | 5,941,027,440 | 98.93% | 48.42% | |
| Asia4h | 69,525,450 | 64,765,390 | 5,828,885,100 | 98.44% | 46.80% | |
| Asia4p | 72,361,440 | 66,537,616 | 5,988,385,440 | 97.66% | 46.70% | |
| Asia4s | 69,299,166 | 66,394,148 | 5,975,473,320 | 98.93% | 49.77% | |
| Asia5h | 74,425,026 | 68,937,678 | 6,204,391,020 | 98.42% | 47.79% | |
| Asia5p | 73,305,770 | 67,419,728 | 6,067,775,520 | 97.69% | 47.33% | |
| Asia5s | 71,279,266 | 65,365,328 | 5,882,879,520 | 97.60% | 45.52% | |
| Asia6h | 74,365,432 | 69,060,388 | 6,215,434,920 | 98.39% | 47.92% | |
| Asia6p | 72,644,928 | 67,460,244 | 6,071,421,960 | 97.89% | 46.33% | |
| Asia6s | 73,273,656 | 66,293,454 | 5,966,410,860 | 97.42% | 45.54% | |
| Males of stage II (>4 years old) | Asib1Mh | 72,188,720 | 63,966,898 | 5,757,020,820 | 97.07% | 47.16% |
| Asib1Mp | 75,207,960 | 66,281,450 | 5,965,330,500 | 96.92% | 49.41% | |
| Asib1Ms | 72,592,714 | 64,475,040 | 5,802,753,600 | 97.03% | 47.83% | |
| Asib2Mh | 74,034,946 | 64,347,466 | 5,791,271,940 | 96.39% | 47.05% | |
| Asib2Mp | 75,130,342 | 66,688,110 | 6,001,929,900 | 97.03% | 48.55% | |
| Asib2Ms | 78,521,204 | 68,848,698 | 6,196,382,820 | 96.44% | 47.63% | |
| Asib3Mh | 73,725,658 | 64,308,048 | 5,787,724,320 | 96.39% | 47.39% | |
| Asib3Mp | 76,342,778 | 66,185,388 | 5,956,684,920 | 96.25% | 49.09% | |
| Asib3Ms | 72,932,412 | 64,883,560 | 5,839,520,400 | 97.28% | 48.45% | |
| Asib4Mh | 74,922,504 | 65,787,098 | 5,920,838,820 | 97.10% | 47.83% | |
| Asib4Mp | 72,112,948 | 64,477,384 | 5,802,964,560 | 97.31% | 48.73% | |
| Asib4Ms | 74,155,504 | 66,560,382 | 5,990,434,380 | 97.41% | 47.62% | |
| Asib5Mh | 74,257,722 | 65,455,208 | 5,890,968,720 | 97.30% | 47.64% | |
| Asib5Mp | 72,514,462 | 64,153,698 | 5,773,832,820 | 97.16% | 48.83% | |
| Asib5Ms | 72,364,498 | 64,203,156 | 5,778,284,040 | 97.20% | 48.38% | |
| Asib6Mh | 77,055,568 | 69,113,198 | 6,220,187,820 | 98.16% | 47.90% | |
| Asib6Mp | 71,823,302 | 64,353,128 | 5,791,781,520 | 97.20% | 49.45% | |
| Asib6Ms | 72,246,744 | 64,729,436 | 5,825,649,240 | 97.92% | 48.86% | |
| Females of stage II (>4 years old) | Asib1Mh-F | 74,665,948 | 68,391,072 | 6,155,196,480 | 98.03% | 45.91% |
| Asib1Mp-F | 73,798,512 | 66,751,484 | 6,007,633,560 | 97.34% | 48.00% | |
| Asib1Ms-F | 71,299,822 | 65,498,596 | 5,894,873,640 | 97.48% | 50.08% | |
| Asib2Mh-F | 83,710,718 | 77,999,142 | 7,799,914,200 | 99.11% | 46.16% | |
| Asib2Mp-F | 83,710,096 | 79,028,428 | 7,902,842,800 | 99.16% | 47.22% | |
| Asib2Ms-F | 81,447,328 | 77,768,116 | 7,776,811,600 | 99.22% | 50.92% | |
| Asib3Mh-F | 72,980,510 | 69,235,160 | 6,923,516,000 | 99.02% | 47.17% | |
| Asib3Mp-F | 60,687,670 | 55,755,734 | 5,575,573,400 | 98.91% | 47.72% | |
| Asib3Ms-F | 56,086,878 | 52,698,650 | 5,269,865,000 | 99.00% | 49.66% | |
| Total | 2,848,107,868 | 2,588,182,624 | 237,061,288,460 |