Table 1.
CpG methylation within the 15 kb promoter region of genes in the P15 iron-deficient rat hippocampus.
| Hypermethylation | Hypomethylation | ||||||
|---|---|---|---|---|---|---|---|
| Gene Name | #CpG | DMethylation(%) | q-value | Gene Name | #CpG | DMethylation(%) | q-value |
| Adamts19 | 5 | 58.5 | 0.016 | Abhd11 | 5 | −36.6 | 0.032 |
| Aebp1 | 5 | 10.5 | 0.118 | Adarb2 | 6 | −19.7 | 0.031 |
| Ak4 | 6 | 56.0 | 0.016 | Arhgap28 | 5 | −21.2 | 0.026 |
| Ankrd13a | 5 | 26.8 | 0.024 | Arhgef15 | 5 | −41.6 | 0.025 |
| Arf1 | 6 | 17.8 | 0.026 | Arhgef3 | 6 | −19.8 | 0.048 |
| Arhgap31 | 5 | 36.8 | 0.035 | Armc8 | 9 | −10.7 | 0.041 |
| Armc3 | 8 | 43.1 | 0.031 | Bag2 | 6 | −21.8 | 0.059 |
| B4galnt3 | 5 | 31.8 | 0.040 | Cds1 | 6 | −27.8 | 0.047 |
| Bcl11b | 6 | 44.7 | 0.035 | Commd1 | 6 | −40.4 | 0.016 |
| Btbd9 | 5 | 23.6 | 0.039 | Dip2a | 10 | −57.3 | 0.039 |
| Cacna1c | 5 | 27.9 | 0.032 | Dnaja2 | 6 | −39.0 | 0.037 |
| Camk2b | 9 | 19.3 | 0.032 | Dnpep | 5 | −14.3 | 0.051 |
| Capn12 | 7 | 21.5 | 0.024 | Dpf1 | 10 | −20.6 | 0.039 |
| Chd2 | 7 | 59.7 | 0.031 | Dpf3 | 6 | −13.3 | 0.018 |
| Clvs1 | 11 | 26.5 | 0.031 | Fkrp | 10 | −77.7 | 0.018 |
| Cog3 | 5 | 27.4 | 0.032 | Guca1a | 6 | −29.0 | 0.032 |
| Dgki | 5 | 51.3 | 0.026 | Hint1 | 8 | −25.1 | 0.025 |
| Ephb1 | 5 | 33.2 | 0.040 | Jak3 | 8 | −20.4 | 0.023 |
| Ezr | 5 | 51.9 | 0.018 | Kif26b | 6 | −44.2 | 0.031 |
| Fat3 | 9 | 50.1 | 0.018 | Klhl40 | 5 | −25.0 | 0.028 |
| Fig4 | 5 | 47.9 | 0.016 | Lims2 | 10 | −11.6 | 0.016 |
| Foxb2 | 5 | 32.6 | 0.039 | LOC691083 | 5 | −45.6 | 0.045 |
| Gucy2c | 9 | 86.6 | 0.016 | Mknk1 | 5 | −56.8 | 0.025 |
| Hip1r | 5 | 56.4 | 0.034 | Mobp | 5 | −48.9 | 0.048 |
| Iqcg | 9 | 52.6 | 0.020 | Ncf1 | 9 | −38.4 | 0.032 |
| Itsn1 | 5 | 29.8 | 0.032 | Pck1 | 5 | −48.2 | 0.023 |
| Jph3 | 8 | 25.1 | 0.024 | Pgm3 | 5 | −69.0 | 0.024 |
| Kank3 | 5 | 28.7 | 0.031 | Pon2 | 6 | −10.0 | 0.029 |
| Kctd15 | 6 | 55.1 | 0.032 | Ppp1r3b | 7 | −19.4 | 0.031 |
| Kctd6 | 7 | 27.3 | 0.016 | Rasd2 | 5 | −22.4 | 0.016 |
| Macrod1 | 5 | 35.4 | 0.033 | RGD735029 | 5 | −17.2 | 0.032 |
| Map3k11 | 10 | 12.9 | 0.016 | Sardh | 5 | −42.9 | 0.022 |
| Marveld2 | 6 | 17.9 | 0.018 | Sh3pxd2a | 5 | −39.4 | 0.016 |
| Mc3r | 5 | 42.2 | 0.016 | Slit3 | 5 | −41.5 | 0.029 |
| Mib1 | 6 | 48.9 | 0.032 | Smyd3 | 6 | −28.2 | 0.112 |
| Mogat1 | 5 | 27.4 | 0.035 | Ss18l1 | 6 | −18.6 | 0.042 |
| Mrpl19 | 6 | 23.9 | 0.059 | St8sia1 | 6 | −20.1 | 0.016 |
| Myo3b | 5 | 17.1 | 0.024 | Tal1 | 7 | −35.1 | 0.024 |
| Neto2 | 6 | 24.3 | 0.031 | Tmem120b | 5 | −37.7 | 0.024 |
| Olr987 | 5 | 21.1 | 0.016 | Tmem181 | 5 | −47.1 | 0.018 |
| Pabpn1l | 5 | 33.3 | 0.016 | Trrap | 5 | −28.2 | 0.023 |
| Pde2a | 5 | 28.6 | 0.025 | Usf2 | 10 | −18.3 | 0.016 |
| Pde6c | 6 | 46.1 | 0.024 | Ush1g | 9 | −17.2 | 0.037 |
| Ppp1r21 | 15 | 24.9 | 0.030 | Ust | 5 | −54.1 | 0.037 |
| Prkar1b | 5 | 40.2 | 0.024 | Wiz | 5 | −45.3 | 0.034 |
| Ptpn14 | 5 | 30.1 | 0.016 | ||||
| Rev3l | 5 | 16.7 | 0.023 | ||||
| Ric8b | 6 | 42.0 | 0.025 | ||||
| Riok2 | 5 | 48.0 | 0.031 | ||||
| Sbk1 | 6 | 39.5 | 0.026 | ||||
| Scrt2 | 6 | 36.8 | 0.038 | ||||
| Slc38a1 | 5 | 38.2 | 0.029 | ||||
| Slc5a1 | 7 | 37.4 | 0.026 | ||||
| Snurf | 5 | 34.7 | 0.001 | ||||
| Spon1 | 8 | 73.6 | 0.031 | ||||
| Srgap2 | 5 | 28.6 | 0.026 | ||||
| Tbc1d20 | 6 | 13.5 | 0.042 | ||||
| Tenm2 | 5 | 42.5 | 0.016 | ||||
| Tfap2b | 5 | 22.6 | 0.035 | ||||
| Tgif2 | 5 | 32.2 | 0.017 | ||||
| Tnni1 | 31 | 29.8 | 0.016 | ||||
| Unc93b1 | 5 | 54.8 | 0.020 | ||||
| Usp36 | 21 | 28.8 | 0.043 | ||||