| ALD1 | AGD2-like defense response gene 1 |
| DBG | De Bruijn Graph |
| DEGs | Differential expression genes |
| eggNOG | Evolutionary genealogy of genes: Non-supervised Orthologous Groups |
| ETI | Effector-triggered immunity |
| FDR | False discovery rate |
| FPKM | Expected number of Fragments Per Kilobase of transcript sequence per Millions base pairs sequenced |
| GO | Gene Ontology |
| HPLC | High-performance liquid chromatography |
| HR | Hypersensitive response |
| ISR | Immune system resistance |
| ITS | Internal transcribed spacer |
| KAAS | KEGG Automatic Annotation Server |
| KEGG | Kyoto Encyclopedia of Genes and Genome |
| MAS | Molecular assisted selection |
| NPR1 | Nonexpressor of pathogenesis-related gene 1 |
| Nr | NCBI non-redundant protein sequences |
| p | p-value |
| PCD | Programmed cell death |
| PR1 | Pathogenesis-related gene 1 |
| PTI | Pathogen-associated molecular patterns triggered immunity |
| qRT-PCR | Quantitative reverse transcriptase polymerase chain reaction |
| RCW | Reinforcement of the cell wall |
| ROS | Reactive oxygen species |
| SA | Salicylic acid |
| SAR | System acquired resistance |
| TGA | Trans-activating TGA Factors |