Table 4. List of known anther and microspore development-related genes in turnip and species other than Arabidopsis.
| Gene ID | log2 fold change (Ogura-CMS line/ maintainer line) | Up/down-regulation (Ogura-CMS line/ maintainer line) | Species | Gene name | Description | References |
|---|---|---|---|---|---|---|
| Anther development/Tapetum development and degeneration | ||||||
| TRINITY_DN23291_c0_g9 | -6.858249 | down | Oryza sativa | GAMYB | MYB transcription factor | [68,69] |
| TRINITY_DN24913_c2_g6 | -3.344908 | down | Oryza sativa | GAMYB | MYB transcription factor | [68,69] |
| TRINITY_DN24913_c2_g4 | -5.085345 | down | Oryza sativa | GAMYB | MYB transcription factor | [68,69] |
| Pollen development | ||||||
| TRINITY_DN25127_c0_g3 | 1.157526 | up | Brassica napus/Oryza sativa | A6/Osg1 | Similar to β-1,3-glucanase | [70,71] |
| TRINITY_DN25738_c0_g3 | -1.398578 | down | Brassica rapa | BrASK2 | Shaggy-like protein kinase | [72] |
| TRINITY_DN25738_c0_g5 | -8.831513 | down | Brassica rapa | BrASK2 | Shaggy-like protein kinase | [72] |
| TRINITY_DN25738_c0_g2 | # | down | Brassica rapa | BrASK2 | Shaggy-like protein kinase | [72] |
| TRINITY_DN23175_c0_g2 | -6.511601 | down | Brassica rapa | BrASK2 | Shaggy-like protein kinase | [72] |
| Pollen wall development | ||||||
| TRINITY_DN27860_c1_g1 | -1.816880 | down | Oryza sativa | TDR | bHLH transcription factor | [73] |
| TRINITY_DN24360_c3_g3 | -11.780927 | down | Brassica campestris | BcMF9 | Polygalacturonase 3 (PGA3) | [74] |
| TRINITY_DN26838_c0_g1 | -11.405028 | down | Brassica campestris | BcMF9 | Polygalacturonase 3 (PGA3) | [74] |
| Pollen intine development | ||||||
| TRINITY_DN27040_c1_g9 | -9.032317 | down | Brassica campestris | BcPLL9 | Pectatelyase-like 9 | [75] |
| TRINITY_DN27040_c1_g15 | # | down | Brassica campestris | BcPLL9 | Pectatelyase-like 9 | [75] |
| TRINITY_DN27040_c1_g4 | -8.186261 | down | Brassica campestris | BcPLL9 | Pectatelyase-like 9 | [75] |
| TRINITY_DN27040_c1_g6 | -9.846965 | down | Brassica campestris | BcPLL9 | Pectatelyase-like 9 | [75] |
| TRINITY_DN23900_c2_g6 | # | down | Brassica campestris | BcMF8 | Arabinogalactan protein | [76,77] |
| TRINITY_DN23900_c2_g1 | -4.547789 | down | Brassica campestris | BcMF8 | Arabinogalactan protein | [76,77] |
| TRINITY_DN21829_c0_g1 | -9.421529 | down | Brassica campestris | BcMF18 | Arabinogalactan protein | [78] |
# specifically expressed genes in inflorescences of the maintainer fertile (MF) line of turnip.