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. 2019 Jun 14;14(6):e0218029. doi: 10.1371/journal.pone.0218029

Table 5. Novel genotype-specific expressed genes with proposed function in male organ development based on GO analyses.

Gene ID Maintainer line of turnip Ogura-CMS line of turnip Regulated Proposed function
Rep1_FPKM Rep2_FPKM Rep3_FPKM Rep1_FPKM Rep2_FPKM Rep3_FPKM
TRINITY_DN19577_c0_g2 1.25 1.08 1.12 0 0 0 down Protein GAMETE EXPRESSED 2
TRINITY_DN23051_c0_g11 1.67 2.06 1.41 0 0.04 0 down Zinc finger protein ZAT3
TRINITY_DN23051_c0_g7 1.67 2.06 1.41 0 0.04 0 down Zinc finger protein ZAT3
TRINITY_DN21111_c0_g1 23.61 14.06 28.67 0 0 0 down MADS-box transcription factor 56
TRINITY_DN27168_c1_g1 21.32 11.07 30.7 0 0 0 down MADS-box transcription factor
TRINITY_DN26124_c2_g12 4.78 2.73 5.97 0 0 0 down Transcription factor bHLH84
TRINITY_DN24536_c1_g10 13.25 5.04 49.07 0 0 0 down Copper transporter 1-like
TRINITY_DN21496_c0_g1 4.45 9.51 3.35 0 0 0 down Nicotianamine synthase
TRINITY_DN26355_c0_g14 75.57 24.19 181.55 0 0 0 down ADP-ribosylation factor GTPase-activating protein AGD10
TRINITY_DN26355_c0_g13 61.77 24.55 145.28 0 0 0.17 down ADP-ribosylation factor GTPase-activating protein AGD10
TRINITY_DN25568_c0_g4 0.68 1.2 0 0 0 0 down Receptor-like protein 12
TRINITY_DN23305_c1_g3 14.47 5.96 22.17 0 0 0.1 down E3 ubiquitin-protein ligase ORTHRUS 2
TRINITY_DN24462_c0_g13 23.71 15.5 22.11 0 0 0 down Indole-3-acetic acid-amido synthetase GH3.9
TRINITY_DN22388_c0_g1 191.36 144.98 23.21 0 0 0 down Non-specific lipid-transfer protein-like protein
TRINITY_DN22388_c0_g4 113.92 90.76 14.87 0 0 0.25 down Non-specific lipid-transfer protein-like protein
TRINITY_DN22388_c0_g5 34.33 26.18 18.52 0 0 0 down Non-specific lipid-transfer protein-like protein
TRINITY_DN26904_c2_g5 29.98 23.43 32.42 0 0 0 down Probable methyltransferase PMT17
TRINITY_DN23083_c4_g4 37.56 23.91 15.94 0 0 0 down Probable methyltransferase PMT17
TRINITY_DN26904_c2_g3 51.31 36.79 4.6 0 0 0 down Probable methyltransferase PMT17
TRINITY_DN4311_c0_g1 2.76 1.4 1.71 0 0 0 down Probable serine protease EDA2
TRINITY_DN24972_c0_g2 20.13 17.06 0.99 0 0 0 down Uncharacterized protein
TRINITY_DN27618_c0_g1 78.27 95.23 75.59 0 0 0.69 down Uncharacterized protein
TRINITY_DN22737_c1_g7 6.71 5.23 22.32 0 0 0 down Function unkown
TRINITY_DN24700_c2_g1 35.39 23.24 13.14 0 0 0 down Function unkown
TRINITY_DN22388_c0_g7 101.23 70.46 98.04 0 0 0 down Function unkown
TRINITY_DN24377_c2_g5 6.15 8.72 19.02 0 0 0 down Function unkown