Table 1. Genes in which Tn insertions altered germination.
| Gene | p-valuea | Fold-change Sample 1b | Fold-change Sample 2b | Reference for Ger defect |
|---|---|---|---|---|
| cotH | 2.2E-35 | 15.0 | 10.9 | [33] |
| gerAA | 4.4E-31 | 150.1 | 43.7 | [18, 34] |
| gerAC | 2.0E-29 | 279.9 | 73.9 | [18, 34] |
| cotE | 3.8E-24 | 17.0 | 12.0 | [35] |
| ygaC | 2.3E-18 | 4.6 | 4.2 | |
| yqfT | 3.0E-16 | 15.4 | 8.8 | |
| ypzK | 6.3E-16 | 10.1 | 9.7 | |
| yqeF | 2.0E-15 | 3.3 | 5.5 | |
| ymzD-ymcCc | 5.7E-13 | 2.5 | 2.7 | |
| gerPF | 5.8E-13 | 7.4 | 4.1 | [36] |
| safA | 1.1E-11 | 7.3 | 4.1 | [37] |
| pcrB | 2.3E-11 | 3.0 | 2.6 | |
| ylbC | 3.9E-11 | 4.1 | 2.9 | |
| gidA | 1.3E-10 | 4.2 | 2.8 | |
| gerPB | 1.0E-09 | 5.9 | 3.6 | [36] |
| gerPC | 3.1E-09 | 11.7 | 3.9 | [36] |
| nocA | 4.2E-09 | 2.0 | 2.2 | |
| veg | 1.1E-08 | 4.8 | 3.2 | [38] |
| gerE | 1.8E-08 | Infinite | 32.0 | [34] |
| ytoA | 2.2E-08 | 5.1 | 4.1 | |
| ytpA | 1.0E-07 | 5.3 | 4.6 | |
| ytpB | 1.1E-07 | 3.9 | 3.5 | |
| rsbW | 1.2E-07 | 2.2 | 2.5 | |
| yfhD | 2.8E-07 | 4.2 | 4.6 | |
| cotZ | 7.7E-07 | 2.1 | 3.1 | [39] |
| yqhL | 1.1E-06 | 4.3 | 2.5 | |
| kinB | 1.8E-06 | 1.6 | 1.9 | |
| skfC | 1.9E-06 | 7.9 | 3.7 | |
| skfE | 3.8E-06 | 8.4 | 3.7 | |
| gerAB | 5.8E-06 | 181.7 | 73.6 | [18, 34] |
| ymaB | 6.6E-06 | 1.9 | 2.9 | |
| sipT | 7.5E-06 | 2.5 | 2.8 | |
| skfG | 9.7E-06 | 3.5 | 2.3 | |
| phoR | 1.0E-05 | 2.5 | 3.0 | |
| cotN (tasA) | 1.5E-05 | 2.1 | 2.2 | [40] |
| yhbJ | 2.8E-05 | 1.8 | 1.7 | |
| yhaM | 3.3E-05 | 4.6 | 2.5 | |
| ymaF | 3.7E-05 | 8.1 | 2.8 | |
| yabG | 1.7E-04 | 2.5 | 2.3 | [41] |
| spoVID | 1.8E-04 | 2.7 | 2.1 | [42] |
| yqhR | 3.6E-04 | 2.3 | 2.0 | |
| yonF | 4.7E-04 | 1.8 | 3.0 | |
| spoVAF | 4.8E-04 | 2.2 | 1.8 | [43] |
| hfq | 6.7E-04 | 3.2 | 2.5 | |
| yosK | 9.2E-04 | 4.4 | 6.4 | |
| yozE | 9.4E-04 | 3.0 | 4.8 | |
| yopI | 1.1E-03 | 2.3 | 2.8 | |
| flgN | 1.2E-03 | 14.2 | 3.6 | |
| gerD | 1.2E-03 | 2.6 | 1.9 | [34] |
| fliW | 2.0E-03 | 1.9 | 3.4 | |
| yfbJ | 2.0E-03 | 3.1 | 2.3 | |
| ytmO | 2.1E-03 | 4.0 | 3.5 | |
| gerPE | 2.1E-03 | 6.5 | 1.7 | [36] |
| phoP | 2.3E-03 | 3.2 | 3.4 | |
| gerPD | 4.7E-03 | 8.2 | 3.2 | [36] |
| tufA | 5.2E-03 | 5.7 | 3.1 | |
| ispA | 5.7E-03 | 2.9 | 2.8 | |
| yoqL | 1.7E-02 | 6.1 | 3.7 | |
| dnaJ | 4.7E-02 | 2.5 | 2.9 | |
| yaaB (remB) | 5.0E-02 | 7.4 | 2.3 | |
| ytxG | 2.1E-01 | 2.7 | 2.9 | |
| yybT (gdpP) | 2.4E-01 | 7.5 | 2.1 |
a p-value determined using DESeq2 [23] comparing Dormant and Germinated sample read counts.
b Fold change in read counts of Dormant/Germinated samples
c Intergenic region