Table 3:
dbSNP | Alleles/Genotypes | Case (n=148) N (%) | Control (n=133) N (%) | P value | OR (95% CI) |
---|---|---|---|---|---|
rs28096 | A | 110 (37.4) | 105 (39.5) | 0.61 | 0.91 (0.65–1.28) |
G | 184 (62.16) | 161 (60.5) | 0.61 | 1.09 (0.77–1.53) | |
AA | 19 (12.9) | 20 (15.0) | 0.61 | 0.83 (0.42–1.65) | |
AG | 72 (49.0) | 65 (48.9) | 0.98 | 1.00 (0.62–1.60) | |
GG | 56 (38.1) | 48 (36.1) | 0.72 | 1.08 (0.67–1.77) | |
HWE | 0.798 | ||||
rs30187 | T | 129 (43.6) | 102 (38.9) | 0.26 | 1.21 (0.86–1.69) |
C | 167 (56.4) | 160 (61.1) | 0.26 | 0.82 (0.58–1.15) | |
TT | 28 (18.9) | 18 (13.7) | 0.24 | 1.46 (0.76–2.79) | |
TC | 73 (49.3) | 66 (50.4) | 0.86 | 0.95 (0.59–1.53) | |
CC | 47 (31.8) | 47 (35.9) | 0.46 | 0.83 (0.50–1.36) | |
HWE | 0.498 | ||||
rs26653 | C | 122 (41.5) | 112 (42.1) | 0.88 | 0.97 (0.69–1.36) |
G | 172 (58.5) | 154 (57.9) | 0.88 | 1.02 (0.73–1.43) | |
CC | 27 (18.4) | 25 (18.8) | 0.92 | 0.97 (0.53–1.77) | |
CG | 68 (46.3) | 62 (46.6) | 0.95 | 0.98 (0.61–1.57) | |
GG | 52 (35.4) | 46 (34.6) | 0.89 | 1.03 (0.63–1.69) | |
HWE | 0.618 | ||||
rs3734016 | A | 293 (99.0) | 266 (100) | 0.099 | - |
G | 3 (1) | 0 (0) | 0.099 | - | |
AA | 145 (98.0) | 133 (100) | 0.099 | - | |
AG | 3 (2) | 0 (0) | 0.099 | - | |
GG | 0 (.0) | 0 (0) | - | - | |
HWE | 1.00 | ||||
rs34750 | C | 174 (59.18) | 155 (58.27) | 0.82 | 1.03 (0.74–1.45) |
G | 120 (40.82) | 111 (41.73) | 0.82 | 0.96 (0.68–1.34) | |
CC | 54 (36.73) | 47 (35.34) | 0.80 | 1.06 (0.65–1.73) | |
CG | 66 (44.90) | 61 (45.86) | 0.87 | 0.96 (0.60–1.54) | |
GG | 27 (18.37) | 25 (18.80) | 0.21 | 0.97 (0.53–1.77) | |
HWE | 0.51 | ||||
rs2549782 | T | 121 (40.88) | 107 (40.23) | 0.87 | 1.02 (0.73–1.43) |
G | 175 (59.12) | 159 (59.77) | 0.87 | 0.97 (0.69–1.36) | |
TT | 51 (34.5) | 43 (32.3) | 0.70 | 1.10 (0.66–1.80) | |
TG | 73 (49.3) | 73 (54.9) | 0.35 | 0.80 (0.50–1.27) | |
GG | 24 (16.2) | 17 (12.8) | 0.41 | 1.32 (0.67–2.58) | |
HWE | 0.10 | ||||
rs17408150 | A | 25 (8.4) | 34 (12.8) | 0.094 | 0.62 (0.36–1.08) |
T | 271 (91.6) | 232 (87.2) | 0.094 | 1.58 (0.92–2.74) | |
AA | 0 (0) | 3 (2.3) | 0.066 | - | |
AT | 25 (16.9) | 28(21.1) | 0.37 | 0.76 (0.41–1.38) | |
TT | 123 (83.1) | 102(76.7) | 0.17 | 1.49 (0.83–2.69) | |
HWE | 0.52 |
OR, odds ratio; CI, confidence interval; - means Not Calculated