Table 2. True positive rate of fusion genes identified using the individual pieces of software and the meta-caller.
| Sample | EricScript | JAFFA | FusionCatcher | meta-caller | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| fusions overall | TP | TP rate (%) | fusions overall | TP | TP rate (%) | fusions overall | TP | TP rate (%) | fusions overall | TP | TP rate (%) | |
| T1 | 207 | 3 | 1.45 | 37 | 5 | 13.51 | 48 | 4 | 8.33 | 9 | 3 | 33.33 |
| T2 | 275 | 0 | 0 | 22 | 1 | 4.55 | 19 | 2 | 10.53 | 2 | 1 | 50.00 |
| T3 | 180 | 0 | 0 | 13 | 0 | 0 | 18 | 0 | 0 | 1 | 0 | 0 |
| T4 | 188 | 1 | 0.53 | 20 | 0 | 0 | 7 | 1 | 14.29 | 2 | 1 | 50.00 |
| T5 | 211 | 2 | 0.95 | 8 | 2 | 25.00 | 10 | 1 | 10.00 | 3 | 2 | 66.67 |
| T6 | 165 | 0 | 0 | 16 | 1 | 6.25 | 14 | 1 | 7.14 | 1 | 1 | 100.00 |
| T7 | 182 | 0 | 0 | 15 | 3 | 20.00 | 31 | 4 | 12.90 | 6 | 3 | 50.00 |
| T8 | 133 | 0 | 0 | 12 | 0 | 0 | 39 | 1 | 2.56 | 1 | 0 | 0 |
| T9 | 336 | 0 | 0 | 30 | 1 | 3.33 | 29 | 1 | 3.45 | 4 | 1 | 25.00 |
| T10 | 189 | 4 | 2.12 | 29 | 6 | 20.69 | 53 | 7 | 13.21 | 11 | 7 | 63.64 |
| TOTAL | 2,066 | 10 | 0.48 | 202 | 19 | 9.41 | 268 | 22 | 8.21 | 40 | 19 | 47.50 |