TABLE 8.
Loop reconstruction results for the dataset Set 12Res
| PDB | NGK | Galaxy PS1 |
Galaxy PS2 |
NearLooper | ConLooper | HyLooper1 | ResLooper | HyLooper2 |
|---|---|---|---|---|---|---|---|---|
| 1a8d | 3.7 | 4.5 | 3.1 | 2.8 | 2.6 (0.38) | 2.8 | 2.8 (0.14) | 2.8 |
| 1arb | 1.7 | 2.1 | 1.9 | 0.4 | 1.2 (0.78) | 0.4 | 1.1 (0.21) | 0.4 |
| 1bhe | 1.7 | 2.3 | 3.5 | 4.6 | 3.7 (0.28) | 3.4 | 3.5 (0.71) | 3.3 |
| 1bn8 | 1.1 | 4.3 | 1.1 | 4.8 | 4.4 (0.22) | 4.8 | 5.7 (0.4) | 4.8 |
| 1c5e | 1.2 | 2.2 | 1.5 | 1.7 | 2 (0.71) | 1.7 | 3.6 (0.22) | 1.7 |
| 1cb0 | 0.9 | 5.7 | 0.9 | 6 | 5.8 (0.65) | 6 | 5.9 (0.4) | 5.9 |
| 1cnv | 6.3 | 6.4 | 6.5 | 1.1 | 2.4 (0.9) | 1.1 | 1.2 (0.16) | 1.1 |
| 1cs6 | 1.1 | 1.7 | 1.6 | 2.3 | 2.3 (0.29) | 2.3 | 2.4 (0.23) | 2.3 |
| 1dqz | 7.5 | 1.5 | 3.3 | 0.2 | 1.3 (0.94) | 0.2 | 1.2 (0.23) | 0.2 |
| 1exm | 1.1 | 3 | 1.3 | 4.2 | 3.4 (0.25) | 4.2 | 3.9 (0.3) | 3.8 |
| 1f46 | 2.6 | 4.5 | 3.8 | 4.4 | 3.5 (0.59) | 3 | 3.7 (0.75) | 4.4 |
| 1i7p | 1.9 | 2.8 | 1.7 | 4.3 | 3.4 (0.25) | 4.3 | 4.3 (0.9) | 4.3 |
| 1m3s | 3.2 | 4.3 | 2.7 | 0.9 | 2.5 (0.54) | 0.9 | 1.5 (0.33) | 0.9 |
| 1ms9 | 1.8 | 1.8 | 1.8 | 5.2 | 4.7 (0.64) | 5.2 | 5 (0.11) | 5.2 |
| 1my7 | 0.9 | 2.4 | 1 | 0.5 | 1.6 (0.45) | 0.5 | 0.7 (0.8) | 0.7 |
| 1oth | 0.8 | 1.1 | 0.9 | 1.6 | 2 (0.43) | 1.6 | 1.4 (0.16) | 1.4 |
| 1oyc | 0.7 | 2.7 | 1.2 | 3.1 | 3 (0.27) | 3.1 | 3 (0.3) | 3.1 |
| 1qlw | 6 | 2.5 | 2.9 | 4.2 | 5.1 (0.59) | 4.2 | 5.1 (0.72) | 4.2 |
| 1t1d | 1.3 | 2.5 | 1.5 | 0.9 | 1.8 (0.64) | 0.9 | 1.1 (0.21) | 0.9 |
| 2pia | 0.7 | 4.5 | 0.7 | 2.5 | 2.9 (0.3) | 2.5 | 2.1 (0.45) | 2.5 |
| Average | 2.31 | 3.14 | 2.15 | 2.79 | 2.98 | 2.65 | 3.01 | 2.69 |
| Std. dev. | 2.03 | 1.46 | 1.4 | 1.82 | 1.27 | 1.73 | 2.67 | 1.74 |
RMSD scores are used to compare performances among methods. For ConLooper and ResLooper, the experiment is executed 10 times to get the average RMSD and standard deviation for each protein. All the numbers are in Å.