Table 3.
Genetic differentiation (i.e., pairwise F ST values) estimated by Weir and Cockerham (1984) index
| Samples pair | Overall SNPs datasets | Overlapped SNPs dataset | ||||
|---|---|---|---|---|---|---|
| GBS | Rapture | Pool‐seq | GBS | Rapture | Pool‐seq | |
| GAS|LOB |
0.0021 [0.0014 to 0.0029] |
0.0022 [0.0014 to 0.0029] |
0.0077 [0.0066 to 0.0088] |
0.0016 [0.0004 to 0.0028] |
0.0017 [0.0007 to 0.0027] |
0.0081 [0.0068 to 0.0093] |
| GAS|SID |
0.0001
[−0.0004 to 0.0008] |
0.0004
[−0.0001 to 0.0011] |
0.0046 [0.0036 to 0.0055] |
0
[−0.0010 to 0.0009] |
0
[−0.0011 to 0.0005] |
0.0060 [0.0048 to 0.0071] |
| GAS|SJH |
0.0030 [0.0023 to 0.0037] |
0.0018 [0.0011 to 0.0025] |
0.0033 [0.0023 to 0.0045] |
0.0020 [0.0010 to 0.0031] |
0.0015 [0.0005 to 0.0024] |
0.0041 [0.0029 to 0.0053] |
| GAS|THE |
0.0026 [0.0018 to 0.0032] |
0.0015 [0.0007 to 0.0022] |
0.0085 [0.0071 to 0.0100] |
0.0013 [0.0003 to 0.0022] |
0.0008
[−0.0001 to 0.0017] |
0.0095 [0.0081 to 0.0110] |
| GAS|TRI |
0.0006 [2.5e−5 to 0.0012] |
0.0006 [3e−5 to 0.0012] |
0.0047 [0.0038 to 0.0056] |
0.0004
[−5e−5 to 0.0013] |
0.0004
[−4e−4 to 0.0013] |
0.0061 [0.0050 to 0.0073] |
| LOB|SID |
0.0010 [0.0002 to 0.0016] |
0.0017 [0.0010 to 0.0024] |
0.0071 [0.0060 to 0.0082] |
0.0010
[−5e−5 to 0.0020] |
0.0016 [0.0007 to 0.0026] |
0.0078 [0.0066 to 0.0090] |
| LOB|SJH |
0.0009 [0.0002 to 0.0016] |
0
[−0.0007 to 0.0006] |
0.0030 [0.0019 to 0.0040] |
0.0012 [0.0002 to 0.0023] |
0.0007
[−0.002 to 0.0017] |
0.0037 [0.0025 to 0.0049] |
| LOB|THE |
0.0006
[−3.9e−5 to 0.0014] |
0.0002
[−0.0005 to 0.0009] |
0.0085 [0.0072 to 0.0098] |
0.0009
[−0.0001 to 0.0020] |
0.0006
[−0.0004 to 0.0015] |
0.0086 0.0071 to 0.0100] |
| LOB|TRI |
0.0018 [0.0010 to 0.0024] |
0.0023 [0.0015 to 0.0030] |
0.0064 [0.0053 to 0.0073] |
0.0012 [0.0001 to 0.0024] |
0.0025 [0.0013 to 0.0036] |
0.0069 [0.0057 to 0.0081] |
| SID|SJH |
0.0025 [0.0018 to 0.0031] |
0.0014 [0.0008 to 0.0020] |
0.0032 [0.0021 to 0.0043] |
0.0022 [0.0012 to 0.0032] |
0.0016 [0.007 to 0.0025] |
0.0040 [0.0029 to 0.0053] |
| SID|THE |
0.0021 [0.0014 to 0.0028] |
0.0013 [0.0006 to 0.0020] |
0.0088 [0.0075 to 0.0101] |
0.0011 [4e−5 to 0.0021] |
0.0008
[−0.0001 to 0.0018] |
0.0098 [0.0083 to 0.0113] |
| SID|TRI |
0.0002
[−4e−5 to 0.0007] |
0.0006 [1e−6 to 0.0012] |
0.0047 [0.0038 to 0.0057] |
0.0004
[−0.0004 to 0.0014] |
0.0004
[−0.0004 to 0.0013] |
0.0056 [0.0045 to 0.0067] |
| SJH|THE |
0
[−0.0008 to 0.0002] |
0
[−0.0014 to −1e−3] |
0.0009
[−0.0002 to 0.0022] |
3.23e−6
[−0.009 to 0.0010] |
0.0002
[−0.0007 to 0.0013] |
0.0037 [0.0023 to 0.0051] |
| SJH|TRI |
0.0024 [0.0017 to 0.0035] |
0.0015 [0.0008 to 0.0021] |
0.0024 [0.0014 to 0.0035] |
0.0019 [0.0009 to 0.0029] |
0.0016 [0.0006 to 0.0026] |
0.0036 [0.0024 to 0.0048] |
| THE|TRI |
0.0022 [0.0015 to 0.0029] |
0.0019 [0.0011 to 0.0027] |
0.0077 [0.0065 to 0.0090] |
0.0021 [0.0009 to 0.0031] |
0.0021 [0.0010 to 0.0031] |
0.0099 [0.0085 to 0.0115] |
| Average F ST | 0.0014 | 0.0011 | 0.0054 | 0.0011 | 0.0011 | 0.0065 |
95% confidence intervals were obtained after 1,000 bootstraps and are provided below F ST values. Sampling sites codes are detailed in the Figure 1 (i.e., sampling map). Values in bold were not significant.