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. 2019 Jun 17;20:339. doi: 10.1186/s12859-019-2929-8

Table 4.

RNA SPCA Enriched GO Terms

SPC Contributing Genes (Gene Name|GeneID) Enriched GO Biological Processes
X6 ADAM6|8755, FBP4|2167, FN1|2335, GAPDH|2597, KRT13|3860, KRT16|3868, KRT17|3872, LOC96610|96,610 Cornification
X2 COL1A1|1277, COL1A2|1278, COL3A1|1281, FN1|2335, KRT13|3860, KRT14|3861, KRT16|3868, KRT17|3872, KRT5|3852, KRT6A|3853, SPARC|6678 Cornificationa, keratinocyte differentiation, wound healing, cell-substrate junction assemblya, collagen fibril organizationa
X9 ACTB|60, ADAM6|8755, COL1A1|1277, COL1A2|1278, FN1|2335, LAMC2|3918, TGFBI|7045 Skin morphogenesis, protein heterotrimerization, platelet activationa, cell junction assembly, cell junction organization, extracellular matrix organization, extracellular structure organization, blood vessel developmenta, cell adhesion
X7 ADAM6|8755, FABP4|2167, KRT16|3868, KRT17|3872, KRT5|3852, KRT6B|3854, LOC96610|96,610, PI3|5266 Cornificationa, programmed cell death, cell death, keratinization, skin development
X1 KRT14|3861, KRT16|3868, KRT17|3872, KRT5|3852, KRT6A|3853, KRT6B|3854, KRT6C|286,887, S100A9|6280 Cornificationa, intermediate filament cytoskeleton organizationa, cell death, hair cycle
X3 COL1A1|1277, COL1A2|1278, COL3A1|1281, KRT13|3860, KRT14|3861, KRT16|3868, KRT17|3872, KRT5|3852, KRT6A|3853, KRT6B|3854, KRT6C|286,887, SFN|2810 Cornificationa, multicellular organism development, intermediate filament cytoskeleton organizationa, collagen fibril organization

SPC gene sets listing both gene names and Entrez gene IDs; PANTHER annotation terms found to be enriched in each of the SPC gene sets. Annotation terms are reported in increasing order of p-value, with all p < 0.001. a indicates some lower level hierarchical terms omitted for brevity