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. 2019 Jun 17;19:259. doi: 10.1186/s12870-019-1842-7

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — Manhattan plots of EMMAX for 5 agronomic traits in genome-wide association studies. Negative log10(P) values from a genome-wide scan are plotted against position on each of 12 chromosomes. a Manhattan plots of EMMAX for heading days. Red horizontal dashed line indicates the genome-wide significant threshold; b Manhattan plots of EMMAX for plant height; c Manhattan plots of EMMAX for seed set rate; d Manhattan plots of EMMAX for panicle length; e Manhattan plots of EMMAX for grain length. Black, red and green arrow represent the loci close to previous genes, new loci and identical in Guangzhou and Hangzhou, respectively