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. 2019 Jun 17;20:342. doi: 10.1186/s12859-019-2928-9

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© The Author(s). 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 6 — Venn diagram depicting the comparison of top four pipelines. GiaB variants (a) compared against the top 4 performing pipelines (b) BWA_SAMtools, (c) BWA_DeepVariant, (d) Novoalign_DeepVariant, (e) Novoalign_SAMtools, (f) BWA_GATK and (g) Novoalign_GATK for SNVs (a, c) and InDels (b, d) on exome-1 (top row) and exome-2 (bottom row)