. 2019 Jun 17;85(13):e00369-19. doi: 10.1128/AEM.00369-19

TABLE 1.

Genomic features of Prochlorococcus and SAR11 single-cell genomes^a

Genus	SAG reference no.	Clade	No. of contigs	Assembled size (bp)	No. of genes	No. of single-copy core genes	Completeness (%)		Redundancy (CheckM, %)	G+C (%)
Genus	SAG reference no.	Clade	No. of contigs	Assembled size (bp)	No. of genes	No. of single-copy core genes	Core	CheckM	Redundancy (CheckM, %)	G+C (%)
Prochlorococcus	SCGC AAA795-F05	HLII	136	1,418,374	1,632	1,033	90.2	78.6	0.27	31.4
Prochlorococcus	SCGC AAA795-I06	HLII	120	1,388,767	1,604	981	85.9	77.5	0.10	31.1
Prochlorococcus	SCGC AAA795-I15	HLII	221	1,282,941	1,428	989	86.6	70.7	0.97	31.3
Prochlorococcus	SCGC AAA795-J16	HLII	85	1,463,721	1,691	1,033	90.3	78.7	0.52	31.0
Prochlorococcus	SCGC AAA795-M23	HLII	93	1,443,989	1,710	1,012	88.7	74.6	0.34	31.2
SAR11	SCGC AAA795-A08	Ia	61	374,567	384	158	24.3	24.5	0.00	28.3
SAR11	SCGC AAA795-A20	Ia	63	1,140,609	1,199	584	90.0	76.7	0.00	29.1
SAR11	SCGC AAA795-B16	Ib	95	551,717	600	331	51.0	34.7	0.06	29.4
SAR11	SCGC AAA795-C09	Ia	82	667,038	734	390	60.1	44.6	0.88	28.4
SAR11	SCGC AAA795-C10	Ia	55	477,445	503	213	32.8	34.9	0.23	29.3
SAR11	SCGC AAA795-D22	Ia	68	1,010,421	1,082	555	85.5	69.9	0.60	28.8
SAR11	SCGC AAA795-E07	II	101	681,366	737	418	64.4	56.9	1.37	29.7
SAR11	SCGC AAA795-E22	Ib	63	801,227	820	417	64.3	47.6	0.34	29.0
SAR11	SCGC AAA795-F16	Ib	74	945,491	1,017	509	78.4	65.9	0.00	29.1
SAR11	SCGC AAA795-G15	II	62	294,337	342	132	20.3	19.1	0.46	30.5
SAR11	SCGC AAA795-J21	Ia	77	872,902	954	404	62.2	51.5	0.70	29.1
SAR11	SCGC AAA795-K18	Ia	114	731,292	782	314	48.4	48.7	0.70	29.9
SAR11	SCGC AAA795-L23	Ia	150	834,822	910	489	75.3	54.4	0.60	27.8
SAR11	SCGC AAA795-M18	Ib	61	1,050,527	1,072	456	70.3	58.9	1.41	29.2
SAR11	SCGC AAA795-M22	Ib	80	860,157	921	515	79.4	64.2	0.13	29.4
SAR11	SCGC AAA795-N08	Ia	157	575,315	622	272	41.9	33.3	0.55	29.1
SAR11	SCGC AAA795-N17	II	94	611,592	620	361	55.6	38.0	0.42	29.5
SAR11	SCGC AAA795-O19	Ia	62	804,609	862	379	58.4	54.2	0.04	29.1
SAR11	SCGC AAA795-O20	Ia	62	1,009,143	1,074	526	81.0	69.0	0.04	29.0
SAR11	SCGC AAA795-P11	Ia	127	977,727	1,021	485	74.7	52.4	1.32	29.2
SAR11	SCGC AAA797-I19	Ia	77	1,016,895	1,071	468	72.1	66.4	0.59	29.2

Single cells were isolated from a surface sample from the eastern Red Sea (19.75°N, 40.05°E). Prochlorococcus clades are ecotypes, and SAR11 clades are subclades. Completeness is reported as the fraction of 1,144 Prochlorococcus or 649 SAR11 single-copy core OGs found in each SAG; completeness is also reported as the percentage of bacterial single-copy core OGs present as determined by CheckM. Redundancy of bacterial single-copy core OGs is defined as the contamination parameter from the CheckM software.