. 2019 Jun 18;14(6):e0218306. doi: 10.1371/journal.pone.0218306

Table 1. ANOVA table for DC-PCA of SNP data on oats using three SNP codings: Rare = 1 (and common = 1 is identical), VCF with oat line 189 as the reference genome, and the data as received.

Both VCF189 and the received data are instances of SNP coding mixed.

`Source`	`df`	`SS rare = 1`	`SS VCF189`	`SS received`
`Total`	`851534`	`157442.756`	`175776.962`	`210084.641`
`SNPs`	`1340`	`16872.731`	`35206.937`	`69514.616`
`Individuals`	`634`	`2077.808`	`6286.978`	`482.151`
`SxI`	`849560`	`138492.217`	`134283.047`	`140087.874`
`IPC1`	`1973`	`15566.723`	`12202.771`	`16158.469`
`IPC2`	`1971`	`9512.804`	`9172.430`	`9687.670`
`IPC3`	`1969`	`5836.915`	`6163.309`	`6246.232`
`IPC4`	`1967`	`4831.287`	`4140.115`	`4803.660`
`IPC5`	`1965`	`3507.237`	`3478.698`	`3488.106`
`IPC6`	`1963`	`2997.351`	`3100.062`	`3181.724`
`IPC7`	`1961`	`2887.575`	`2839.061`	`2881.938`
`Residual`	`835791`	`93352.327`	`93186.601`	`93640.076`