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. Author manuscript; available in PMC: 2020 Jun 1.
Published in final edited form as: Curr Protoc Toxicol. 2019 Apr 14;80(1):e75. doi: 10.1002/cptx.75

Table 1.

Summary of human mtDNA and nDNA restriction endonuclease fragment sizes detected via Southern blotting with mtDNA- and nDNA-specific probes.

mtDNA fragment sizes nDNA fragment sizes
Single or double
digest reactionsa
Observed
molecular weight
(kb)b
Expected
molecular weight
(kb)
Observed
molecular
weight (kb)b
Expected
molecular
weight (kb)
SphI 15.9 ± 0.78c 16.6 N/Ad 29.7
BamHI 15.9 ± 0.78c 16.6 2.10 ± 0.08 2.2
PstI 15.4 ± 0.62c 14.5 6.05 ± 0.13 5.5
Mono. EcoRI 8.65 ± 0.57 8.1 6.30 ± 0.08 5.8
Poly. EcoRI N/A N/A 16.4 ± 0.98c 17.8
Mono. EcoRI + SphI 6.75 ± 0.10 6.4 6.05 ± 0.10 5.6
Poly. EcoRI + SphI N/A N/A 16.6 ± 0.93c 17.5
Mono. EcoRI + PstI 8.65 ± 0.57 8.1 5.23 ± 0.13 4.8
Poly. EcoRI + PstI N/A N/A 6.03 ± 0.10 5.5
a

Mono. EcoRI and Poly. EcoRI, the 18S monomorphic and polymorphic EcoRI alleles respectively that are discussed in the legend to Fig. 2.

b

The average values for n = 4 blots done on different days using 5 preparations of whole-cell extracted DNA are reported with errors as standard deviations.

c

For SphI, BamHI, PstI, Poly. EcoRI, and Poly. EcoRI + SphI digests generating fragment lengths greater than 10 kb, restriction fragment lengths detected via Southern blotting were estimated using linear regression of the log10 base pair values of Lambda DNA/HindIII Marker, 2 fragments loaded onto the same gel versus distance traveled in millimeters. For the remaining reactions generating fragments lengths less than 10 kb, the log10 base pair values of exACTGene™ 1kb Plus DNA ladder fragments versus distance traveled in millimeters were utilized as standards to estimate molecular weights.

d

The molecular weight of the 18S nDNA fragment cut with SphI exceeded the range of both standard curves generated utilizing either the lambda DNA HindIII fragments or the exACTGene™ ladder fragments; therefore, a calculated molecular weight is not reported for this sample. N/A, not applicable.