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. 2019 Jun 11;27(11):3345–3358.e4. doi: 10.1016/j.celrep.2019.05.057
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Synaptophysin, clone YE269 Abcam Cat# ab32127; RRID: AB_2286949
E-Cadherin, clone 24E10 Cell Signaling Technology Cat# 3195; RRID: AB_2291471
NFIB Thermo Fisher Scientific Cat# PA5-28299; RRID: AB_2545775
Calcitonin Gene Related Peptide (CGRP) Sigma-Aldrich Cat# C8198; RRID: AB_259091
Ki67 Abcam Cat# ab15580; RRID: AB_443209
Anti-Cytokeratin, wide-spectrum/KWS Agilent Cat# Z0622; RRID: AB_2650434
Anti-phospho-Histone H3 (Thr3), clone JY325 Merck Millipore Cat# 04-746; RRID: AB_1163442
Podoplanin Abcam Cat# ab11936; RRID: AB_298718
MASH1/ASCL1 BD Biosciences Cat# 556604; RRID: AB_396479
ALDH1A1 Abcam Cat# ab23375; RRID: AB_2224009
NEUROD1 Proteintech Cat# 12081-1-AP
Phospho-Akt (Ser473) Cell Signaling Technology Cat# 4060; RRID: AB_2315049
Anti-4E-BP1, phospho (Thr37 / Thr46) Cell Signaling Technology Cat# 2855; RRID: AB_560835

Bacterial and Virus Strains

Ad5-CMV-Cre Viral Vector Core Facility, University of IOWA Health Care N/A

Chemicals, Peptides, and Recombinant Proteins

Cyclosporin A Sigma-Aldrich Cat# 30024
Cisplatin Accord Healthcare Ltd Dutch drug database ZI# 15683354
Neo-clear® Merck Millipore Cat# 109843
Sequencing Grade Modified Trypsin Promega Cat# V5111

Deposited Data

Mass spectrometry proteomics data This study ProteomeXchange: PXD010680
RNA-seq data This study European Nucleotide Archive: PRJEB28270

Experimental Models: Organisms/Strains

Mouse: Rb1flox/flox;Trp53flox/flox Meuwissen et al., 2003 N/A
Mouse: Rb1flox/flox;Trp53flox/flox;CAG < Lox66Mycl-LucLox71 > Huijbers et al., 2014 N/A
Mouse: Rb1flox/flox;Trp53flox/flox;CAG < Lox66Nfib-LucLox71 > Semenova et al., 2016 N/A

Software and Algorithms

Living Image acquisition and analysis software PerkinElmer N/A
AxioVision 4 software Carl Zeiss Vision N/A
MaxQuant version 1.5.4.1 Cox and Mann, 2008 http://www.coxdocs.org
TopHat, version 2.1.0 Kim et al., 2013 https://ccb.jhu.edu/software/tophat/index.shtml
GraphPad Prism, versions 6 and 7.04 GraphPad Software www.graphpad.com
Perseus software (version 1.6.1.3) Tyanova et al., 2016 http://www.coxdocs.org
GSEA 3.0 Mootha et al., 2003, Subramanian et al., 2005 www.broadinstitute.org/gsea
STRING tool (version 10.5) Szklarczyk et al., 2017 www.string-db.org
Cytoscape (version 3.4.0) Shannon et al., 2003 www.cytoscape.org
DAVID tool (version 6.8) Huang et al., 2009 david.ncifcrf.gov

Other

IVIS Spectrum In Vivo Imaging System PerkinElmer N/A
Zeiss Axioskop2 Plus microscope Carl Zeiss Microscopy N/A
Zeiss AxioCam HRc digital camera Carl Zeiss Vision N/A
Q Exactive Hybrid Quadrupole-Orbitrap Mass Spectrometer Thermo Fisher Scientific N/A
Ultimate 3000 nanoLC Thermo Fisher Scientific N/A
HiSeq 2000 Sequencing System Illumina N/A