Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Jun 18;6:28. doi: 10.1038/s41439-019-0059-5

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

PMC Copyright notice

Fig. 2 — a Comparison of allele frequencies of variants on chr6 between gnomAD EAS and 3.5KJPNv2. Red dots represent alternative allele frequencies in each population (x-axis: 3.5KJPNv2, y-axis: gnomAD EAS). The green and blue dots show SNVs lacking either in 3.5KJPNv2 or genomAD EAS, respectively. Some outliers denoted by broken circles are described in the text. b Comparison of allele frequencies of variants on chr6 between the RIKEN 2 K panel and 3.5KJPNv2. Colors are used in the same way as in (a). c Comparison of allele frequencies of variants on the X chromosome between gnomAD EAS and 3.5KJPNv2. Colors are used in the same way as in (a). d Distribution of Ts/Tv values for each chromosome. Violin plots were generated from the 3.5KJPNv2 data. The red and green lines are the average values of all 1KGP samples and 1KGP-JPT samples, respectively. In the calculation of Ts/Tv of variants on the X chromosome, only female samples are used. (1KGP ALL: 1271 samples, 1KGP JPT: 48 samples, 3.5KJPNv2: 1999 samples)