Table 3.
Missense variants with largest posterior probabilities of causality (>0.2)
| Variant | Gene | MAF | Average PPC | Traits |
|---|---|---|---|---|
| 7:93244933 | ARRDC3 | 0.099 | 0.608 |
Body_depth|Dtr_Calv_Ease|Net_Merit |Prod_Life|Rear_ud_height|Sire_Calv_Ease |Strength|Teat_length|Udder_depth |
| 6:38027010 | ABCG2 | 0.015 | 0.87 |
Fat|Fat_Percent|Milk|Net_Merit |Pro_Percent|Protein |
| 8:83581466 | PTCH1 | 0.027 | 0.678 | Body_depth|Strength |
| 26:21144708 | SCD | 0.253 | 0.571 | Fat|Fat_Percent |
| 1:69673871 | KALRN | 0.105 | 0.462 | Cow_Conc_Rate|Dtr_Preg_Rate |
| 19:7521843 | ANKFN1 | 0.217 | 0.446 | Rump_width|SCS |
| 29:50290087 | SYT8 | 0.388 | 0.438 | Final_score|Foot_angle |
| 29:50286107 | TNNI2 | 0.203 | 0.436 | Rump_width|Stature |
| 29:50289940 | SYT8 | 0.387 | 0.399 | Final_score|Foot_angle |
| 17:70276788 | CHEK2 | 0.088 | 0.388 | Dtr_Calv_Ease|Sire_Calv_Ease |
| 18:57017616 | POLD1 | 0.103 | 0.291 | Foot_angle|Protein |
| 8:83044210 | FANCC | 0.116 | 0.252 | Rear_teat_pla|Udder_depth |
| 14:1321450 | LOC782261 | 0.207 | 0.206 | Milk|Net_Merit |
| 14:2072259 | LOC786966 | 0.090 | 0.919 | Pro_Percent |
| 18:44378414 | CHST8 | 0.120 | 0.889 | DFB_PTA |
| 5:118244695 | TBC1D22A | 0.177 | 0.676 | Pro_Percent |
| 5:30259026 | NCKAP5L | 0.252 | 0.611 | Teat_length |
| 3:15464749 | GBA | 0.063 | 0.601 | Milk |
| 3:20189903 | ADAMTSL4 | 0.075 | 0.571 | Dairy_form |
| 11:104232298 | ABO | 0.309 | 0.449 | Pro_Percent |
| 19:51319797 | CCDC57 | 0.350 | 0.423 | Fat |
| 18:61020273 | ZNF331 | 0.038 | 0.322 | Dairy_form |
| 19:51319759 | CCDC57 | 0.350 | 0.304 | Fat |
| 8:85147150 | LOC101906801 | 0.117 | 0.302 | Strength |
| 13:58716308 | C13H20orf85 | 0.116 | 0.297 | Fore_udder_att |
| 11:104232319 | ABO | 0.309 | 0.223 | Pro_Percent |
| 14:66328304 | SPAG1 | 0.119 | 0.222 | SCS |