Table 1.
Coverage of the Darmor-bzh genome generated in each sample across all sequencing runs and their associated total percentage of heterozygous genotypes.
| Illumina | Minion | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| All runs | Run 1 | Run 2 | Run 3 | Run 4 | ||||||||
| Coverage | % hets | Coverage | % hets | Coverage | % hets | Coverage | % hets | Coverage | % hets | Coverage | % hets | |
| DH-1 | 7.6 | 3.7 | 4.2 | 4.0 | 0.9 | 2.6 | 0.5 | 2.0 | 1.5 | 2.6 | 1.4 | 2.5 |
| DH-2 | 9.1 | 4.6 | 7.4 | 4.0 | 0.9 | 2.8 | 0.4 | 2.1 | 3.0 | 2.5 | 3.0 | 2.5 |
| DH-3 | 4.9 | 4.8 | 2.8 | 4.4 | 0.9 | 2.7 | 0.6 | 2.0 | 0.7 | 3.1 | 0.6 | 3.0 |
| DH-4 | 8.4 | 6.1 | 3.9 | 4.1 | 1.0 | 2.5 | 0.6 | 1.8 | 1.2 | 2.9 | 1.1 | 2.8 |
| DH-5 | 4.4 | 5.2 | 1.7 | 5.1 | 1.0 | 3.0 | 0.5 | 2.3 | 0.1 | 3.7 | 0.1 | 3.6 |
| DH-6 | 6.3 | 3.6 | 2.4 | 4.0 | 1.1 | 2.4 | 0.5 | 2.1 | 0.4 | 3.2 | 0.4 | 3.0 |
| DH-7 | 12.0 | 4.8 | 4.9 | 4.1 | 0.9 | 2.7 | 0.6 | 2.1 | 1.8 | 2.7 | 1.7 | 2.7 |
| DH-8 | 14.4 | 4.3 | 4.9 | 3.9 | 1.1 | 2.5 | 0.6 | 1.9 | 1.6 | 2.7 | 1.6 | 2.6 |
| DH-9 | 9.5 | 4.1 | 1.7 | 4.2 | 0.9 | 2.5 | 0.5 | 1.9 | 0.2 | 3.5 | 0.1 | 2.9 |
| AVERAGE | 4.6 | 4.2 | 2.6 | 2.0 | 3.0 | 2.8 | ||||||
| Correlation with coverage | −0.09 | −0.56 | −0.15 | −0.47 | −0.89*** | −0.75** | ||||||
***Signif at 0.01.
**Signif at 0.02.