Table 1.
Genotype (GinC)1 |
Genotype × D10 (G × D10)2 |
Genotype × D60 (G × D60)3 |
||||||
---|---|---|---|---|---|---|---|---|
Gene | Ensembl ID | Method | log2 FC4 | p-value | log2 FC4 | p-value | log2 FC4 | p-value |
CEBPB | ENSSSCG00000034207 | RNA-seq | 0.298 | 0.027 | 0.084 | 0.645 | -0.024 | 0.921 |
qPCR | 0.117 | 0.760 | -0.207 | 0.718 | 0.073 | 0.907 | ||
FOSL2 | ENSSSCG00000032527 | RNA-seq | 0.438 | 0.003 | -0.532 | 0.010 | -0.296 | 0.226 |
qPCR | 0.181 | 0.340 | 0.039 | 0.890 | -0.106 | 0.731 | ||
PCDHB7 | ENSSSCG00000036961 | RNA-seq | 2.777 | <0.001 | -0.019 | 0.976 | -2.526 | 0.006 |
qPCR | 0.934 | 0.011 | -0.089 | 0.866 | -1.091 | 0.063 | ||
PFKFB3 | ENSSSCG00000011133 | RNA-seq | -1.028 | 0.006 | 1.298 | 0.011 | 0.368 | 0.600 |
qPCR | -0.844 | 0.065 | 1.177 | 0.085 | 0.411 | 0.575 | ||
PPARGC1A | ENSSSCG00000029275 | RNA-seq | 0.351 | 0.013 | -0.344 | 0.075 | -0.302 | 0.206 |
qPCR | 0.278 | 0.300 | -0.159 | 0.691 | -0.278 | 0.524 | ||
SCARA5 | ENSSSCG00000009672 | RNA-seq | 0.492 | 0.038 | -0.900 | 0.008 | -0.757 | 0.059 |
qPCR | 0.742 | 0.006 | -0.993 | 0.013 | -1.134 | 0.010 | ||
FAXDC2 | ENSSSCG00000017068 | RNA-seq | -0.599 | 0.016 | 0.948 | 0.006 | 1.149 | 0.010 |
qPCR | -0.595 | 0.151 | 0.941 | 0.091 | 0.893 | 0.139 | ||
GCK | ENSSSCG00000016751 | RNA-seq | -1.102 | 0.012 | 1.225 | 0.041 | -0.030 | 0.968 |
qPCR | -1.233 | 0.043 | 1.414 | 0.077 | 0.779 | 0.365 | ||
SLC17A3 | ENSSSCG00000037547 | RNA-seq | 0.476 | 0.046 | -1.142 | 0.001 | -1.018 | 0.055 |
qPCR | 0.291 | 0.443 | -0.576 | 0.231 | -0.611 | 0.243 |
1Genotype (ValVal vs. AlaAla) effect on baseline expression estimated in the saline control (C) group. 2Genotype × treatment interaction estimated by contrasting D10 treatment (10 μg/kg dexamethasone) effects between the genotype groups (expression change between D10 vs. C in ValVal compared to D10 vs. C in AlaAla). 3Genotype × treatment interaction estimated by contrasting D60 treatment (60 μg/kg dexamethasone) effects between the genotype groups (expression change between D60 vs. C in ValVal compared to D60 vs. C in AlaAla). 4Log2 fold change differences between ValVal vs. AlaAla. Bold values highlight p < 0.05.