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. 2019 Jun 12;10:559. doi: 10.3389/fgene.2019.00559

Table 1.

Comparison of estimated genotype and genotype × treatment interaction effects of the GRAla610Val substitution on the expression of selected genes.

Genotype (GinC)1
Genotype × D10 (G × D10)2
Genotype × D60 (G × D60)3
Gene Ensembl ID Method log2 FC4 p-value log2 FC4 p-value log2 FC4 p-value
CEBPB ENSSSCG00000034207 RNA-seq 0.298 0.027 0.084 0.645 -0.024 0.921
qPCR 0.117 0.760 -0.207 0.718 0.073 0.907
FOSL2 ENSSSCG00000032527 RNA-seq 0.438 0.003 -0.532 0.010 -0.296 0.226
qPCR 0.181 0.340 0.039 0.890 -0.106 0.731
PCDHB7 ENSSSCG00000036961 RNA-seq 2.777 <0.001 -0.019 0.976 -2.526 0.006
qPCR 0.934 0.011 -0.089 0.866 -1.091 0.063
PFKFB3 ENSSSCG00000011133 RNA-seq -1.028 0.006 1.298 0.011 0.368 0.600
qPCR -0.844 0.065 1.177 0.085 0.411 0.575
PPARGC1A ENSSSCG00000029275 RNA-seq 0.351 0.013 -0.344 0.075 -0.302 0.206
qPCR 0.278 0.300 -0.159 0.691 -0.278 0.524
SCARA5 ENSSSCG00000009672 RNA-seq 0.492 0.038 -0.900 0.008 -0.757 0.059
qPCR 0.742 0.006 -0.993 0.013 -1.134 0.010
FAXDC2 ENSSSCG00000017068 RNA-seq -0.599 0.016 0.948 0.006 1.149 0.010
qPCR -0.595 0.151 0.941 0.091 0.893 0.139
GCK ENSSSCG00000016751 RNA-seq -1.102 0.012 1.225 0.041 -0.030 0.968
qPCR -1.233 0.043 1.414 0.077 0.779 0.365
SLC17A3 ENSSSCG00000037547 RNA-seq 0.476 0.046 -1.142 0.001 -1.018 0.055
qPCR 0.291 0.443 -0.576 0.231 -0.611 0.243

1Genotype (ValVal vs. AlaAla) effect on baseline expression estimated in the saline control (C) group. 2Genotype × treatment interaction estimated by contrasting D10 treatment (10 μg/kg dexamethasone) effects between the genotype groups (expression change between D10 vs. C in ValVal compared to D10 vs. C in AlaAla). 3Genotype × treatment interaction estimated by contrasting D60 treatment (60 μg/kg dexamethasone) effects between the genotype groups (expression change between D60 vs. C in ValVal compared to D60 vs. C in AlaAla). 4Log2 fold change differences between ValVal vs. AlaAla. Bold values highlight p < 0.05.