Table 3.

Detailed results of GO subcategory and KEGG pathways analyses for DEGs identified via RNA-seq analysis

Top 10 of detailed GO subcategory analysis		Top 10 of KEGG pathways
Downregulated DEGs	Upregulated DEGs	Downregulated DEGs	Upregulated DEGs
Protein storage vacuole	Sulfur compound metabolism	Sulfur relay system	Sulfur metabolism
Plastid thylakoid membrane	Glycosyl compound metabolism	Fatty acid degradation	Carbon metabolism
Oxidoreductase activity	Oxoacid metabolism	Peroxisome	Biosynthesis of amino acids
Intracellular protein transmembrane import	Organic acid metabolism	Cutin, suberine and wax biosynthesis	Citrate cycle (TCA cycle)
Thylakoid membrane	Carbohydrate derivative metabolism	Carotenoid biosynthesis	2-Oxocarboxylic acid metabolism
Photosynthetic membrane	Secondary metabolic process	Tyrosine metabolism	Cysteine and methionine metabolism
Cytoplasm	Response to cadmium ion	alpha-Linolenic acid metabolism	Glucosinolate biosynthesis
Seed maturation	S-glycoside metabolic process	Ascorbate and aldarate metabolism	Tryptophan metabolism
Fruit development	Glucosinolate metabolism	Mismatch repair	Glycine, serine and threonine metabolism
Intramolecular lyase activity	Response to metal ion	Fructose and mannose metabolism	Pyruvate metabolism

The enriched pathways in bold are linked with auxin biosynthesis