Table 4.
List of DEGs involved in auxin transduction identified via RNA-seq analysis
| Gene ID | Arabidopsis orthologs | Va vs Vb (log2FC) | Va vs Ha (log2FC) | Function description |
|---|---|---|---|---|
| BnaA07g28560D | IAR4 | Up (1.7) | Up (1.9) | IAA conjugate sensitivity |
|
BnaA09g42140D BnaC08g34560D |
GH3.3 | Down (−2.3/−3.7) | Down (−2.3/−3.3) | IAA-amido synthase activity |
| BnaC02g36370D | AFB2 | Up (1.7) | Up (2.6) | The dominant auxin receptor |
| BnaC01g20800D | RMA2 | Down (−1.5) | Down (−2.1) | Ubiquitinates Auxin binding protein 1 |
| BnaA10g27350D | SSR1 | Down (−1.7) | Down (−2.6) | Auxin polar transport |
| BnaC02g24140D | PILS3 | Up (2.8) | Up (2.9) | Auxin efflux carrier |
| BnaA04g26870D | ABCB4 | Up (5.2) | Up (2.8) | Auxin efflux transporter |
| BnaA07g19210D | ABCB21 | Up (3.9) | Up (3.2) | Auxin efflux transporter |
| BnaC04g13950D | GSTU5 | Up (2.3) | Up (2.9) | Response to auxin |
| BnaC05g50350D | PATL2 | Up (3.9) | Up (2.1) | Response to auxin |
| BnaC05g23700D | PATL4 | Up (1.2) | Up (1.8) | Response to auxin |
| BnaC08g19040D | ARF5 | Up (2.3) | Up (2.9) | Auxin response factor |
| BnaA05g01310D | ARF11 | Up (3.4) | Up (4.1) | Auxin response factor |