Table 2. Top 25 up and down expressed lncRNA in microarray analysis.
| Seq ID | p value | Fold change | Regulation | Strand | Relationship | Chr | GeneSymbol |
|---|---|---|---|---|---|---|---|
| NR_003548 | 2.35187E-08 | 109.4887219 | up | + | intergenic | 3 | Sprr2g |
| uc007mos.1 | 1.4733E-09 | 47.7396161 | up | - | exon sense-overlapping | 11 | Cyth1 |
| humanlincRNA1590+ | 3.31079E-08 | 44.0254584 | up | + | intergenic | 5 | humanlincRNA1590 |
| ENSMUST00000097928 | 1.94377E-06 | 41.8941913 | up | + | natural antisense | 7 | Gm10574 |
| ENSMUST00000147219 | 1.02731E-08 | 39.3596471 | up | - | exon sense-overlapping | 2 | Lcn2 |
| ENSMUST00000171867 | 1.41682E-07 | 39.0995403 | up | - | intergenic | 14 | Gm9890 |
| ENSMUST00000138796 | 1.00309E-08 | 35.7404452 | up | - | exon sense-overlapping | 16 | BC100530 |
| NR_073362 | 8.0896E-09 | 32.0782555 | up | - | intergenic | 14 | 1700091H14Rik |
| ENSMUST00000167016 | 1.296E-10 | 30.2506392 | up | - | intergenic | 14 | Gm17030 |
| AK053244 | 1.19946E-05 | 30.1399734 | up | - | intergenic | 13 | AK053244 |
| ENSMUST00000163699 | 1.53946E-08 | 29.9253704 | up | - | intergenic | 14 | Gm3719 |
| AK078011 | 1.5941E-07 | 29.2616428 | up | - | intergenic | 14 | AK078011 |
| uc009oqw.1 | 6.091E-10 | 27.1826111 | up | + | intronic antisense | 9 | AK077358 |
| ENSMUST00000146254 | 3.28551E-07 | 25.6293449 | up | - | exon sense-overlapping | 11 | Cd300lf |
| ENSMUST00000149944 | 1.63907E-04 | 25.0363506 | up | + | exon sense-overlapping | 17 | Fpr2 |
| TCONS_00022944 | 1.63913E-08 | 23.5285727 | up | - | intergenic | 4 | TCONS_00022944 |
| ENSMUST00000122073 | 4.7E-12 | 23.0889698 | up | - | intergenic | 4 | Gm12551 |
| ENSMUST00000149186 | 7E-13 | 22.5034757 | up | + | intergenic | 5 | BC028471 |
| AK078752 | 2.10663E-06 | 22.1980481 | up | + | intergenic | 3 | AK078752 |
| ENSMUST00000175727 | 2.52131E-08 | 22.1525562 | up | + | exon sense-overlapping | 2 | AA467197 |
| ENSMUST00000169043 | 1.1936E-07 | 20.8414822 | up | - | intergenic | 14 | Gm17159 |
| NR_028066 | 2.00597E-07 | 20.2041383 | up | - | intergenic | 11 | Gm4926 |
| NR_045891 | 1.61E-11 | 20.0657937 | up | - | intergenic | 13 | 1700016G22Rik |
| ENSMUST00000163480 | 8.719E-10 | 19.6386359 | up | - | intergenic | 14 | Gm3123 |
| ENSMUST00000146415 | 2.36414E-08 | 19.2413828 | up | - | exon sense-overlapping | 4 | Ubxn10 |
| AK015307 | 6.02535E-08 | 126.3849319 | down | + | bidirectional | 1 | AK015307 |
| ENSMUST00000120915 | 1.29281E-07 | 61.9993283 | down | - | intergenic | 3 | Gm12400 |
| uc009kit.1 | 2.20769E-08 | 54.6821234 | down | + | intergenic | 7 | BC024386 |
| ENSMUST00000121475 | 4.523E-10 | 44.2610944 | down | - | intergenic | 3 | Gm12399 |
| ENSMUST00000132986 | 1.306E-10 | 41.1148477 | down | - | intergenic | 11 | Gm12326 |
| ENSMUST00000120693 | 8.7904E-09 | 31.1848562 | down | - | intergenic | 3 | Gm12431 |
| ENSMUST00000137279 | 6.623E-10 | 29.4712609 | down | + | exon sense-overlapping | 13 | Akr1c21 |
| uc007szw.1 | 1.89775E-08 | 28.0074467 | down | + | intergenic | 14 | AK136780 |
| ENSMUST00000152146 | 2.03281E-08 | 23.9584478 | down | - | exon sense-overlapping | 4 | C8a |
| ENSMUST00000145410 | 2.27236E-08 | 22.5110902 | down | + | natural antisense | 9 | Gm16010 |
| AK041352 | 6.3143E-09 | 19.4262943 | down | - | intergenic | 13 | AK041352 |
| TCONS_00000485 | 2.93747E-07 | 18.6743919 | down | - | intergenic | 1 | XLOC_001255 |
| mouselincRNA1395+ | 1.51813E-08 | 17.9271355 | down | + | intergenic | 7 | mouselincRNA1395 |
| ENSMUST00000154598 | 3.01441E-08 | 17.1697404 | down | - | exon sense-overlapping | 2 | Gatm |
| ENSMUST00000131133 | 1.43599E-07 | 16.513081 | down | - | intergenic | 4 | Gm12354 |
| ENSMUST00000155540 | 1.25951E-08 | 16.2209832 | down | - | intergenic | 3 | 5730437C11Rik |
| uc007ana.1 | 1.23943E-07 | 16.0098561 | down | + | intergenic | 1 | AK050085 |
| ENSMUST00000133801 | 3.42096E-07 | 14.7898681 | down | + | exon sense-overlapping | 7 | Aspdh |
| AK045907 | 4.7641E-09 | 14.3347262 | down | - | intronic antisense | 5 | AK045907 |
| humanlincRNA2217- | 2.94943E-07 | 14.1063714 | down | - | intergenic | 4 | humanlincRNA2217 |
| NR_040589 | 6.761E-10 | 13.8372003 | down | + | natural antisense | 3 | 6330410L21Rik |
| NR_102276 | 9.9E-12 | 13.2454412 | down | + | intergenic | 7 | AI314278 |
| AA189272 | 5.1804E-05 | 13.2368177 | down | + | intergenic | 2 | humanlincRNA1141 |
| uc008yin.1 | 3.89772E-08 | 12.9396912 | down | + | intergenic | 5 | AK020506 |
| ENSMUST00000144755 | 8.3739E-08 | 12.8921193 | down | + | exon sense-overlapping | 15 | Ugt3a2 |
SeqID: lncRNA name. P value:P value calculated from unpaired t-test. Fold Change: the absolute ratio (no log scale) of normalized intensities between two groups (IR vs Control). Chr: chromosome no. which lncRNA is transcribed. Strand: the strand of chromosome which lncRNA is transcribed; ‘+’ is sense strand of chromosome, ‘−’ is antisense strand of chromosome. Relationship: sense exon overlap^: the LncRNA’s exon is overlapping a coding transcript exon on the same genomic strand; sense intron overlap^: the LncRNA is overlapping the intron of a coding transcript on the same genomic strand; antisense_exon_overlap^: the LncRNA is transcribed from the antisense strand and overlapping with a coding transcript; antisense_intron_overlap^: the LncRNA is transcribed from the antisense strand without sharing overlapping exons;”bidirection^: the LncRNA is oriented head to head to a coding transcript within 1000 bp; intergenic^: there are no coding transcripts within 30 kb of the LncRNA; others^: means other LncRNAs. GeneSymbol: lncRNA gene symbol.