Table 3.
The Summary of the number of predicted PPIs in the three plant genomes.
| Organism | CC > 0.4 | SVMloc | RFrand | Common | Degree exponent |
|---|---|---|---|---|---|
| Arabidopsis | 133,074,561 (21.36%all) | 13,682,168 (10.28%cc) | 2,440,139 (1.83%cc) | 50,220 (0.0081%all) | 1.362 |
| corn | 24,814,793 (13.54%all) | 13,902,459 (56.02%cc) | 23,223,947 (17.45%cc) | 13,175,414 (7.19%all) | 0.204 |
| soybean | 54,814,995 (15.27%all) | 30,844,273 (56.27%cc) | 24,031,016 (18.06%cc) | 13,527,834 (3.77%all) | 0.401 |
CC > 0.4, the number and the percentage of protein pairs among all the possible protein pairs that satisfied the CC FunSim score criterion of over 0.4; (%all); SVMloc and RFrand, predicted PPIs among pairs that satisfied the CC > 0.4 criterion by SVMloc and RFrand, respectively; Common, commonly predicted PPIs by SVMloc and RFrand; Degree exponent, the parameter value of the power-law distribution of PPIs (Fig. 3). %all is the percentage relative to the all possible protein pairs of the organism while %cc is the percentage relative to the protein pairs that satisfied CC > 0.4.