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. 2017 Nov 27;20(3):931–951. doi: 10.1093/bib/bbx164

Figure 2.

Figure 2

Example of a PSSM_SMTH profile using a smoothing window of size 7. The PSSM profile shows the evolutionary information extracted from the PSSM file, which is generated by PSI-BLAST. When the size of the smoothed window is set to 7, the values of the 7th row in the PSSM_SMTH profile are equal to the sum of the corresponding values from the 7th row to the 13th row of the PSSM file.