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. 2019 Mar 22;85(7):e02806-18. doi: 10.1128/AEM.02806-18

TABLE 1.

B. animalis strains/genomes used in this studya

Species and strain Ecological origin Genome size (Mb) No. of ORFs GC content (%) No. of tRNAs rRNA locus Coverage depth (fold) No. of contigs Source or reference
B. animalis subsp. animalis
 2022B Castor fiber feces 2.4 1,935 61.08 65 2 142 17 RSDC00000000
    2006B Canis lupus familiaris (German shepherd) feces 2.16 1,747 61.24 56 3 195 47 RSDB00000000
    ATCC 25527 Human feces 1.93 1,622 61.35 52 2 24
    ATCC 27672 Rat feces 1.99 1,611 60.97 52 1 NCBI database
    IM386 Human feces 1.93 1,623 61.35 52 1 NCBI database
    LMG10508 Rat feces 1.92 1,619 60.53 52 2 NCBI database
    MCC0483 Rat feces 2.18 1,922 60.97 53 1 NCBI database
    MCC0499 Rat feces 2.13 1,870 61.05 62 1 NCBI database
    MCC1489 Guinea pig feces 1.91 1,619 61.35 52 2 NCBI database
    YL2 Rat feces 2.02 1,705 61.1 52 3 75
B. animalis subsp. lactis
    646 Human feces 1.92 1,673 61.4 52 4 NCBI database
    1316B Phasianus colchicus feces 1.92 1,556 60.47 52 3 195 14 RSDA00000000
    1395B Oryctolagus cuniculus feces 1.92 1,557 60.47 52 2 99 12 RSCZ00000000
    1528B Sus scrofa domesticus feces 1.95 1,600 61.47 55 2 97 12 RSCY00000000
    1802B Macaca sylvanus feces 1.92 1,557 61.36 52 2 132 15 RSCX00000000
    1808B Chlorocebus pygerytrhus feces 1.92 1,556 61.35 52 2 87 15 RSCW00000000
    1811B Chlorocebus pygerytrhus feces 1.68 1,560 61.37 52 2 156 16 RSCV00000000
    1813B Pan troglodytes feces 1.68 1,557 61.36 52 2 247 12 RSCU00000000
    1821B Pan troglodytes feces 1.75 1,636 60.71 53 2 278 40 RSCT00000000
    1843B Pan troglodytes feces 1.68 1,557 61.36 52 2 85 14 RSCS00000000
    1869B Pan troglodytes feces 1.92 1,557 61.36 52 2 229 14 RSCR00000000
    2007B Canis lupus familiaris (Pomeranian) feces 1.97 1,599 61.28 52 1 194 25 RSCQ00000000
    2010B Canis lupus familiaris (Alaskan malamute) feces 1.98 1,607 61.21 52 2 121 29 RSCP00000000
    2011B Canis lupus familiaris (Flat coated retriever) feces 2.08 1,700 61.32 54 1 181 44 RSCO00000000
    A6 Human feces 1.96 1,651 61.38 52 5 NCBI database
    AD011 Infant feces 1.93 1,642 61.38 52 2 76
    ATCC 27536 Chicken feces 1.91 1,632 61.35 52 1 NCBI database
    ATCC 27673 Fermented milk sample 1.95 1,685 61.52 52 3 77
    ATCC 27674 Rabbit feces 1.91 1,629 61.35 52 1 NCBI database
    B420 Human feces 1.94 1,633 61.37 52 3 78
    BB-12 Food matrices 1.97 1,639 61.38 52 3 79
    BF052 Feces of breast-fed infant 1.94 1,632 61.38 52 3 NCBI database
    Bi-07 Human feces 1.94 1,831 61.38 52 3 78
    Bifido_08 Human feces 1.95 1,757 61.32 52 4 NCBI database
    Bifido_11 Human feces 1.94 1,702 61.32 52 4 NCBI database
    Bl_04 Human feces 1.94 1,633 61.38 52 3 5
    Bl12 Human colonoscopic sample 1.94 1,633 61.37 52 3 NCBI database
    BL3 Human feces 1.94 1,639 61.38 52 3 80
    BLC1 Human feces 1.94 1,630 61.37 52 3 81
    BS01 Human feces 1.93 1,632 61.37 52 1 NCBI database
    CECT8145 Infant feces 1.96 1,766 61.38 52 1 NCBI database
    CNCMI-2494 Human feces 1.94 1,635 61.38 52 3 82
    DS1_2 Human feces 1.92 1,636 61.36 52 2 NCBI database
    DS11_2 Human feces 1.92 1,637 61.36 52 2 NCBI database
    DS15_2 Human feces 1.92 1,635 61.37 52 3 NCBI database
    DS2_2 Human feces 1.92 1,634 61.35 52 2 NCBI database
    DS24_2 Human feces 1.92 1,670 61.35 52 1 NCBI database
    DS27_2 Human feces 1.92 1,642 61.35 52 1 NCBI database
    DS28_2 Human feces 1.92 1,633 61.35 52 2 NCBI database
    DSM10140 Human feces 1.94 1,635 61.37 51 3 42
    HN019 Human feces 1.92 1,645 61.35 52 1 NCBI database
    KLDS2.0603 Human feces 1.95 1,646 61.37 52 2 NCBI database
    LMG P-17502_1 Food sample 1.92 1,628 61.36 52 2 NCBI database
    LMG P-17502_2 Food sample 1.92 1,628 61.36 52 1 NCBI database
    RH Human feces 1.93 1,629 61.37 52 2 NCBI database
    V9 Human feces 1.94 1,633 61.38 52 3 NCBI database
a

The references are based on the decoding genomes project according to the NCBI database.