TABLE 1.
Genomic features and sources of strains used in this studya
| Strain | Genome size (Mb) | No. of contigs | Contig_N50 length (bp) | ANI (%) to J1074 | No. of filtered CDSs | Clade | Habitat (origin) | GenBank accession no. | Reference(s) |
|---|---|---|---|---|---|---|---|---|---|
| J1074 | 6.84 | 1 | — | — | 5,860 | I | Soil (—) | NC_020990 | 29 |
| FXJ2.339 | 7.12 | 49 | 377,764 | 99.02 | 6,147 | I | Soil (Kaifeng, Henan Province, China) | PKLK00000000 | 13 |
| NBRC 100770 | 7.16 | 41 | 334,066 | 98.93 | 6,126 | I | Soil (Caucasus) | PKLL00000000 | 13 |
| CGMCC 4.1677 | 6.98 | 66 | 364,125 | 98.97 | 6,018 | I | Muschelkalk (Werra, Germany) | PKLM00000000 | 13 |
| NBRC 12790 | 6.95 | 53 | 309,124 | 98.99 | 5,977 | I | River bank slime (Böhmischbruck, Upper Palatinate, Germany) | PKLN00000000 | 13 |
| DSM 40455T | 6.97 | 66 | 332,544 | 98.91 | 5,952 | I | Contaminated plate (Rome, Italy) | PKLO00000000 | 13 |
| NBRC 13083 | 7.04 | 56 | 278,969 | 98.95 | 6,118 | I | Potato scab (United Kingdom) | PKLP00000000 | 13 |
| “S. wadayamensis” A23 | 7.06 | 928 | 15,752 | 98.68 | 6,167 | I | XXXPlant tissue (Sao Paulo, Brazil) | JHDU00000000 | 89, 90 |
| DSM 40233 | 7.05 | 68 | 262,674 | 98.92 | 6,077 | I | Potato (Germany) | PKLQ00000000 | 13 |
| CGMCC 4.1681 | 7.23 | 54 | 319,881 | 98.88 | 6,283 | I | Contaminated fungus plate (Commercial Solvents Corporation, USA) | PKLR00000000 | 13 |
| D62 | 7.14 | 87 | 256,416 | 98.86 | 6,203 | I | Medicinal herb (Xishuangbanna, Yunnan Province, China) | PKLS00000000 | 13 |
| FXJ8.011 | 7.19 | 48 | 383,364 | 98.91 | 6,203 | I | Deep-sea water (southern Indian Ocean) | PKLT00000000 | 13 |
| FXJ8.008 | 7.17 | 147 | 97,051 | 98.89 | 6,245 | I | Deep-sea water (southern Indian Ocean) | PKLU00000000 | 13 |
| CR13 | 6.95 | 75 | 182,021 | 98.94 | 6,029 | I | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKLV00000000 | 13 |
| CGMCC 4.1615 | 6.96 | 39 | 447,068 | 98.73 | 5,966 | II | Soil (Champavathi River, Andhra Pradesh, India) | PKLW00000000 | 13 |
| CNY228 | 6.96 | 51 | 267,951 | 98.71 | 5,979 | II | Neritic sediment (coastal California, USA) | ARIN00000000 | — |
| FXJ8.031 | 6.96 | 39 | 494,739 | 98.73 | 5,967 | II | Deep-sea water (southwest Indian Ocean) | PKLX00000000 | 13 |
| FXJ6.189 | 7.36 | 42 | 368,474 | 98.72 | 6,465 | II | South China Sea sponge (Wanning port, Hainan Province, China) | PKLY00000000 | This study |
| CR46 | 7.05 | 74 | 247,280 | 98.69 | 6,071 | II | Owl butterfly (San José, Costa Rica) | PKNU00000000 | 13 |
| CR19 | 7.10 | 44 | 514,855 | 98.69 | 6,087 | II | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKNV00000000 | 13 |
| Ma24 | 6.96 | 56 | 317,189 | 98.74 | 5,981 | II | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKNW00000000 | 13 |
| LaPpAH-202 | 7.00 | 37 | 406,114 | 98.64 | 6,001 | II | Unknown insect (Cameroon) | ARDM00000000 | 91 |
| CR33 | 7.16 | 61 | 352,542 | 98.53 | 6,162 | III | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKNX00000000 | 13 |
| CR10 | 7.16 | 38 | 422,844 | 98.52 | 6,135 | III | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKNY00000000 | 13 |
| CR25 | 7.17 | 47 | 522,740 | 98.53 | 6,171 | III | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKNZ00000000 | 13 |
| Ma1 | 7.27 | 36 | 551,090 | 98.52 | 6,312 | III | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKOA00000000 | 13 |
| CR16 | 6.97 | 146 | 113,214 | 98.47 | 6,021 | III | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKOB00000000 | 13 |
| CR15 | 6.96 | 60 | 266,746 | 98.49 | 6,018 | III | Imperial moth (Guanacaste Conservation Area, Costa Rica) | PKOC00000000 | 13 |
| CR47 | 7.13 | 38 | 508,717 | 98.55 | 6,118 | III | Owl butterfly (San José, Costa Rica) | PKOD00000000 | 13 |
| S4 | 7.61 | 269 | 84,643 | 98.53 | 6,513 | III | Leaf-cutting ant (Trinidad) | CADY00000000 | 92 |
| PVA 94-07 | 7.01 | 34 | 527,991 | 96.15 | 5,916 | Outgroup | Shallow-water marine sponge (Trondheim fjord, Norway) | ASHE00000000 | 21 |
| GBA 94-10 | 7.03 | 20 | 559,062 | 96.13 | 5,965 | Outgroup | Shallow-water marine sponge (Trondheim fjord, Norway) | ASHF00000000 | 21 |
| SCA2-2 | 7.05 | 48 | 457,544 | 95.82 | 6,071 | Outgroup | Earthworm (Nanchang, Jiangxi Province, China) | PKMX00000000 | 13 |
a
—, information unavailable.