Table 2:
Number of reads (per individual) used for alignment and statistical processing
| Sample ID | Raw reads | Trimmed reads | Average read length | Non-human reads | |||
|---|---|---|---|---|---|---|---|
| >20 | >25 | >30 | >35 | ||||
| 1_BK4 | 17,507,911 | 17,038,725 | 57.6 | 16,977,024 | 16,902,603 | 16,378,765 | 15,191,086 |
| 4_BK4 | 18,816,573 | 18,215,498 | 51.7 | 18,095,660 | 17,960,494 | 17,086,604 | 15,246,279 |
| 6_BK4 | 16,322,105 | 15,815,995 | 55.0 | 15,551,094 | 15,427,193 | 14,682,610 | 13,220,243 |
| 7_BK4 | 2,231,650 | 2,160,395 | 59.7 | 2,102,955 | 2,095,297 | 2,047,913 | 1,936,435 |
| 9_BK4 | 14,974,057 | 14,503,433 | 53.5 | 14,240,738 | 14,085,752 | 13,149,549 | 11,600,503 |
| 11A_BK4 | 16,432,267 | 16,000,777 | 58.0 | 15,766,313 | 15,695,767 | 15,172,161 | 14,034,604 |
| 11B_BK4 | 18,522,995 | 18,078,222 | 55.7 | 725,913 | 718,941 | 674,747 | 597,601 |
| 12_BK4 | 23,116,936 | 22,273,434 | 55.6 | 21,272,850 | 21,151,065 | 20,156,692 | 18,073,071 |
| 14_BK4 | 17,849,685 | 17,383,629 | 58.8 | 17,310,864 | 17,235,014 | 16,752,835 | 15,595,926 |
| 15_BK4 | 16,062,102 | 15,607,381 | 58.2 | 15,539,859 | 15,460,941 | 14,915,585 | 13,881,414 |
| 17_BK4 | 14,980,797 | 14,496,468 | 58.1 | 14,426,404 | 14,372,805 | 14,078,235 | 13,247,545 |
| 18_BK4 | 24,217,412 | 23,575,201 | 59.1 | 23,370,869 | 23,281,268 | 22,704,123 | 21,306,454 |
| 21_BK4 | 11,890,953 | 11,500,254 | 60.1 | 11,271,958 | 11,237,968 | 11,021,676 | 10,439,448 |
| 22_BK4 | 17,996,717 | 17,498,339 | 58.8 | 17,417,850 | 17,365,274 | 17,013,067 | 16,007,094 |
| 25_BK4 | 17,560,698 | 16,997,518 | 57.7 | 16,888,515 | 16,816,770 | 16,375,850 | 15,237,575 |
| 29_BK4 | 8,994,172 | 8,724,285 | 58.1 | 8,683,928 | 8,642,230 | 8,393,680 | 7,800,006 |
| 31_BK4 | 20,427,813 | 19,941,632 | 58.4 | 19,741,741 | 19,684,774 | 19,309,226 | 18,187,574 |
| 32_BK4 | 35,100,769 | 33,926,405 | 54.9 | 33,754,943 | 33,623,260 | 32,780,233 | 30,194,531 |
| 33_BK4 | 24,501,712 | 23,719,299 | 58.3 | 21,669,095 | 21,595,959 | 21,031,538 | 19,569,420 |
| 34_BK4 | 16,453,473 | 16,047,224 | 57.3 | 14,901,123 | 14,842,998 | 14,421,402 | 13,376,818 |
| 47_BK4 | 18,736,966 | 18,155,651 | 55.6 | 17,998,648 | 17,903,991 | 17,174,561 | 15,478,180 |
| 55_BK4 | 17,435,264 | 16,904,284 | 48.0 | 16,768,595 | 16,530,082 | 14,886,541 | 12,170,210 |
| 65_BK3 | 17,465,925 | 16,921,732 | 50.6 | 16,735,483 | 16,587,671 | 15,466,034 | 13,185,810 |
| 71_BK4 | 17,919,758 | 17,434,181 | 50.4 | 17,086,979 | 17,017,135 | 16,549,441 | 15,441,174 |
| 72_BK4 | 16,355,009 | 15,952,974 | 57.9 | 15,874,302 | 15,812,384 | 15,444,022 | 14,541,576 |
| 73_BK4 | 17,050,731 | 16,578,547 | 57.8 | 16,270,896 | 16,212,738 | 15,778,509 | 14,632,126 |
| 77_BK4 | 14,044,420 | 13,478,859 | 56.0 | 13,390,126 | 13,322,735 | 12,866,845 | 11,763,625 |
| 78_BK4 | 17,004,599 | 16,352,717 | 60.1 | 16,250,859 | 16,164,585 | 15,758,397 | 15,027,226 |