Table 4.
RPKM counts reported in FlyBase for the five DE genes found in our study and for six additional genes, “Developmental Markers” whose expression is higher in the 0–2 h embryo than in later stages. Gene name or Annotation Symbol in parenthesis.
| FlyBase report for wMel infected flies (RPKM)a | |||||
|---|---|---|---|---|---|
| 0–2 h embryo | 2–4 h embryo | 4–6 h embryo | 6–8 h embryo | ||
| DE Genes in this study | FBgn0038339 (CG6118) | 1 | 1 | 1 | 3 |
| FBgn0000451 (ect) | 1 | 1 | 1 | 5 | |
| FBgn0027527 (Osi6) | 10 | 7 | 8 | 31 | |
| FBgn0037414 (Osi7) | 5 | 3 | 4 | 16 | |
| FBgn0037099 (CG7173) | 0 | 0 | 1 | 2 | |
| “Developmental markers” (high 0–2 h; much lower after) | FBgn0024991 (CG2694) | 56 | 9 | 4 | 7 |
| FBgn0035969 (CG4476) | 85 | 2 | 1 | 1 | |
| FBgn0035955 (CG5194) | 56 | 2 | 1 | 1 | |
| FBgn0038316 (CG6276) | 55 | 9 | 2 | 2 | |
| FBgn0037807 (CG6293) | 94 | 7 | 1 | 1 | |
| FBgn0030817 (CG4991) | 156 | 4 | 1 | 1 | |
aNote: RPKM values reported in FlyBase are not expected to be directly comparable to the normalized count values reported in the present study.