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. 2019 Jun 20;9:8974. doi: 10.1038/s41598-019-45451-1

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Comparison of alpha diversity indexes between the swim bladder resident microbiota (SB) and the distal gut digesta microbiota (DIG) in rainbow trout (Oncorhynchus mykiss). Diversity in the swim bladder bacteria and the distal gut digesta bacteria community was measured using Chao-1 (A), phylogeny-based metrics (B), simpson index (C) and shannon index (D). A student-test was used to determine significance differences in Chao-1, phylogeny-based metrics and Shannon index using a critical value of α = 0.05. A Mann-Whitney test was used to determine significance differences in Simpson index using a critical value of α = 0.05. No significant differences were detected for any alpha diversity indexes.