Table 2.
Standard specific (per gram) enthalpy of formation hf⁰, entropy s⁰, and Gibbs free energy of formation gf⁰ of dry bacteria, fungi and algae biomass. Empirical formulas reflect elemental composition of microorganisms and are normalized per mole of carbon atoms. To appreciate the size of a cell, a single Magnetospirillum gryphiswaldense cell can be described by C2.31 × 1010H4.68 × 1010O2.93 × 10⁹N6.56 × 1099Fe4.00 × 10⁷. The thermodynamic parameters for entire cells are given by the equation X⁰cell = mbio · x⁰bio + mw · xw⁰ where X⁰cell is thermodynamic parameter (Hf, S, or Gf) for a single cell, x⁰bio thermodynamic parameter for biomass from this table, mbio mass of the cell dry matter, xw⁰ thermodynamic parameter for water and mw mass of water in the cell (Section 4.3).
| Name | Formula | Reference | hf⁰ (kJ/g) | s⁰ (J/g K) | gf⁰ (kJ/g) |
|---|---|---|---|---|---|
| BACTERIA | |||||
| Bacteria (general) | CH1.666O0.270N0.200 | Abbott and Clamen (1973) | −2.97 ± 0.16 | 1.45 ± 0.29 | −1.10 ± 0.24 |
| Aerobacter aerogenes | CH1.830O0.550N0.250 | Naresh et al. (2011) | −4.95 ± 0.27 | 1.47 ± 0.29 | −3.04 ± 0.35 |
| Brevibacterium flavum | CH1.80O0.33N0.19 | Duboc et al. (1999), Table 9 | −3.65 ± 0.20 | 1.50 ± 0.30 | −1.70 ± 0.28 |
| Bacillus cereus | CH1.49O0.43N0.22 | Duboc et al. (1999), Table 9 | −3.91 ± 0.21 | 1.34 ± 0.26 | −2.18 ± 0.29 |
| Corynebacterium glutamicum | CH1.78O0.44N0.24 | Duboc et al. (1999), Table 9 | −4.27 ± 0.23 | 1.47 ± 0.29 | −2.37 ± 0.31 |
| Escherichia coli | CH1.770O0.490N0.240 | Bauer and Ziv (1976) | −4.57 ± 0.24 | 1.45 ± 0.29 | −2.68 ± 0.33 |
| E. coli | CH1.74O0.34N0.22 | Duboc et al. (1999), Table 9 | −3.58 ± 0.19 | 1.47 ± 0.29 | −1.68 ± 0.28 |
| E. coli K-12: grown on Acetic acid | CH1.54O0.4N0.21 | Battley (1992), Table 3 | −3.79 ± 0.20 | 1.37 ± 0.27 | −2.02 ± 0.28 |
| E. coli K-12: grown on glucose | CH1.74O0.464N0.26 | Battley (1992), Table 3 | −4.32 ± 0.23 | 1.44 ± 0.28 | −2.45 ± 0.32 |
| E. coli K-12: grown on glucose | CH1.81O0.40N0.22 | Battley (1992), Table 3 | −4.09 ± 0.22 | 1.49 ± 0.29 | −2.16 ± 0.31 |
| E. coli K-12: grown on glucose | CH1.73O0.53N0.235 | Battley (1992), Table 3 | −4.77 ± 0.26 | 1.43 ± 0.28 | −2.91 ± 0.34 |
| E. coli K-12: grown on glucose | CH1.78O0.511N0.237 | Battley (1992), Table 3 | −4.71 ± 0.25 | 1.46 ± 0.29 | −2.82 ± 0.34 |
| E. coli K-12: grown on glucose | CH1.81O0.49N0.234 | Battley (1992), Table 3 | −4.62 ± 0.25 | 1.47 ± 0.29 | −2.72 ± 0.33 |
| E. coli K-12: grown on glucose | CH1.54O0.34N0.24 | Battley (1992), Table 3 | −3.28 ± 0.18 | 1.37 ± 0.27 | −1.51 ± 0.26 |
| E. coli K-12: grown on Succinic acid | CH1.56O0.36N0.23 | Battley (1992), Table 3 | −3.48 ± 0.19 | 1.38 ± 0.27 | −1.69 ± 0.27 |
| E. coli W: grown on glucose | CH1.698O0.427N0.250 | Battley (1992), Table 3 | −4.07 ± 0.22 | 1.43 ± 0.28 | −2.21 ± 0.30 |
| E. coli W: grown on glycerol | CH1.698O0.427N0.250 | Battley (1992), Table 3 | −4.07 ± 0.22 | 1.43 ± 0.28 | −2.21 ± 0.30 |
| Flavobacterium dehydrogenans | CH1.63O0.40N0.21 | Duboc et al. (1999), Table 9 | −3.90 ± 0.21 | 1.41 ± 0.28 | −2.07 ± 0.29 |
| Klebsiella aerogenes | CH1.750O0.430N0.220 | Naresh et al. (2011) | −4.22 ± 0.23 | 1.46 ± 0.29 | −2.33 ± 0.31 |
| Klebsiella aerogenes | CH1.730O0.430N0.240 | Naresh et al. (2011) | −4.15 ± 0.22 | 1.45 ± 0.29 | −2.27 ± 0.31 |
| Klebsiella aerogenes | CH1.750O0.470N0.170 | Naresh et al. (2011) | −4.61 ± 0.25 | 1.46 ± 0.29 | −2.72 ± 0.33 |
| Klebsiella aerogenes | CH1.730O0.430N0.240 | Naresh et al. (2011) | −4.15 ± 0.22 | 1.45 ± 0.29 | −2.27 ± 0.31 |
| Lactobacillus helveticus | CH1.58O0.39N0.23 | Duboc et al. (1999), Table 9 | −3.72 ± 0.20 | 1.38 ± 0.27 | −1.93 ± 0.28 |
| Magnetospirillum gryphiswaldense | CH2.060O0.130N0.280Fe0.00174 | Naresh et al. (2011) | −2.18 ± 0.12 | 1.67 ± 0.33 | −0.02 ± 0.22 |
| Methanobacterium thermoautotrophicum | CH1.63O0.43N0.22 | Duboc et al. (1999), Table 9 | −4.08 ± 0.22 | 1.40 ± 0.28 | −2.26 ± 0.30 |
| Methylococcus capsulatus | CH2.000O0.500N0.270 | van Dijken and Harder (1975) | −4.79 ± 0.26 | 1.55 ± 0.30 | −2.79 ± 0.35 |
| Paracoccus denitrificans | CH1.510O0.460N0.190 | Shimizu et al. (1978) | −4.21 ± 0.23 | 1.35 ± 0.27 | −2.47 ± 0.30 |
| Paracoccus denitrificans | CH1.810O0.510N0.200 | Stouthamer (1977) | −4.83 ± 0.26 | 1.47 ± 0.29 | −2.92 ± 0.35 |
| Pseudomonas C12B | CH2.000O0.520N0.230 | Mayberry et al. (1968) | −5.01 ± 0.27 | 1.55 ± 0.30 | −3.00 ± 0.36 |
| Saccharopolyspora erythraea (a) | CH1.61O0.47N0.19 | Duboc et al. (1999), Table 9 | −4.39 ± 0.24 | 1.39 ± 0.27 | −2.59 ± 0.32 |
| Saccharopolyspora erythraea (b) | CH1.68O0.47N0.16 | Duboc et al. (1999), Table 9 | −4.55 ± 0.24 | 1.43 ± 0.28 | −2.70 ± 0.33 |
| YEAST | |||||
| Saccharomyces cerevisiae | CH1.613O0.557N0.158P0.012S0.003K0.022Mg0.003Ca0.001 | Battley, 1999a,b | −5.04 ± 0.27 | 1.32 ± 0.26 | −3.32 ± 0.35 |
| Saccharomyces cerevisiae | CH1.640O0.520N0.160 | Harrison (1967) | −4.82 ± 0.26 | 1.40 ± 0.28 | −3.00 ± 0.34 |
| Saccharomyces cerevisiae | CH1.830O0.560N0.170 | Kok and Roels (1980) | −5.22 ± 0.28 | 1.48 ± 0.29 | −3.31 ± 0.37 |
| Saccharomyces cerevisiae | CH1.810O0.510N0.170 | Wang et al. (1976) | −4.92 ± 0.26 | 1.48 ± 0.29 | −3.00 ± 0.35 |
| Saccharomyces cerevisiae Whi 2+ | CH1.65O0.57N0.14 | Duboc et al. (1999), Table 9 | −5.17 ± 0.28 | 1.40 ± 0.28 | −3.36 ± 0.36 |
| Saccharomyces cerevisiae Whi 2− | CH1.64O0.5N0.18 | Duboc et al. (1999), Table 9 | −4.64 ± 0.25 | 1.40 ± 0.28 | −2.82 ± 0.33 |
| Saccharomyces cerevisiae CBS 426a | CH1.56O0.52N0.16 | Duboc et al. (1999), Table 9 | −4.73 ± 0.25 | 1.36 ± 0.27 | −2.96 ± 0.33 |
| Saccharomyces cerevisiae CBS 426b | CH1.52O0.51N0.19 | Duboc et al. (1999), Table 9 | −4.54 ± 0.24 | 1.35 ± 0.27 | −2.80 ± 0.32 |
| Candida utilis | CH1.830O0.540N0.100 | Herbert (1976) | −5.32 ± 0.29 | 1.49 ± 0.29 | −3.39 ± 0.37 |
| Candida utilis | CH1.870O0.560N0.200 | Naresh et al. (2011) | −5.18 ± 0.28 | 1.49 ± 0.29 | −3.25 ± 0.36 |
| Candida utilis | CH1.830O0.460N0.190 | Naresh et al. (2011) | −4.58 ± 0.25 | 1.49 ± 0.29 | −2.65 ± 0.33 |
| Candida utilis | CH1.870O0.560N0.200 | Naresh et al. (2011) | −5.18 ± 0.28 | 1.49 ± 0.29 | −3.25 ± 0.36 |
| Candida utilis ATCC 9950 | CH1.66O0.56N0.07 | Duboc et al. (1999), Table 9 | −5.34 ± 0.29 | 1.41 ± 0.28 | −3.51 ± 0.37 |
| Candida kefyr NCYC 1441 | CH1.66O0.44N0.12 | Duboc et al. (1999), Table 9 | −4.44 ± 0.24 | 1.42 ± 0.28 | −2.60 ± 0.32 |
| Debaryomyces hansenii | CH1.71O0.6N0.10 | Duboc et al. (1999), Table 9 | −5.52 ± 0.30 | 1.42 ± 0.28 | −3.68 ± 0.38 |
| Debaryomyces nepaliensis CBS 5921 | CH1.77O0.63N0.09 | Duboc et al. (1999), Table 9 | −5.78 ± 0.31 | 1.45 ± 0.28 | −3.90 ± 0.39 |
| Kluyveromyces marxianus NRRL 665 | CH1.73O0.53N0.17 | Duboc et al. (1999), Table 9 | −4.95 ± 0.27 | 1.44 ± 0.28 | −3.08 ± 0.35 |
| Zygosaccharomyces bailii NCYC 563 | CH1.63O0.55N0.13 | Duboc et al. (1999), Table 9 | −5.07 ± 0.27 | 1.39 ± 0.27 | −3.26 ± 0.35 |
| FILAMENTOUS FUNGI | |||||
| Aspergillus niger | CH1.60O0.55N0.10 | Duboc et al. (1999), Table 9 | −5.12 ± 0.27 | 1.38 ± 0.27 | −3.33 ± 0.36 |
| Aspergillus niger (spores) | CH1.50O0.53N0.12 | Duboc et al. (1999), Table 9 | −4.83 ± 0.26 | 1.34 ± 0.26 | −3.10 ± 0.34 |
| Mucor rouxii | CH1.79O0.43N0.07 | Duboc et al. (1999), Table 9 | −4.68 ± 0.25 | 1.49 ± 0.29 | −2.74 ± 0.34 |
| Neurospora crassa | CH1.80O0.45N0.13 | Duboc et al. (1999), Table 9 | −4.65 ± 0.25 | 1.49 ± 0.29 | −2.72 ± 0.34 |
| Penicillium chrysogenum | CH1.87O0.22N0.08 | Duboc et al. (1999), Table 9 | −3.09 ± 0.17 | 1.59 ± 0.31 | −1.02 ± 0.26 |
| ALGAE | |||||
| Algae (general) | CH2.481O1.038N0.151P0.00943 | Wang et al. (2017) | −7.77 ± 0.42 | 1.61 ± 0.32 | −5.68 ± 0.51 |
| Chlamydomonas | CH1.65O0.39N0.12 | Duboc et al. (1999), Table 9 | −4.08 ± 0.22 | 1.43 ± 0.28 | −2.23 ± 0.30 |
| Chlorella | CH1.719O0.404N0.175P0.0105 | Manahan and Manahan (2009) | −4.15 ± 0.22 | 1.44 ± 0.28 | −2.29 ± 0.31 |
| Chlorella a sp. MP-1 | CH1.793O0.608N0.121 | Phukan et al. (2011) | −5.59 ± 0.30 | 1.46 ± 0.29 | −3.70 ± 0.39 |
| Chlorella minutissima | CH1.714O0.286N0.143 | Prajapati et al. (2014) | −3.30 ± 0.18 | 1.48 ± 0.29 | −1.38 ± 0.26 |
| Chlorella pyrenoidosa | CH1.625O0.250N0.125 | Prajapati et al. (2014) | −2.89 ± 0.16 | 1.44 ± 0.28 | −1.03 ± 0.24 |
| Chlorella vulgaris | CH1.667O0.222N0.111 | Prajapati et al. (2014) | −2.73 ± 0.15 | 1.47 ± 0.29 | −0.82 ± 0.23 |
| Chrorella sp. ATCC 7516 (medium 5) | CH1.76O0.35N0.09 | Duboc et al. (1999), Table 9 | −4.00 ± 0.21 | 1.49 ± 0.29 | −2.07 ± 0.30 |
| Chlorella Spain sp. ATCC 7516 (medium S) | CH1.78O0.36N0.12 | Duboc et al. (1999), Table 9 | −4.03 ± 0.22 | 1.50 ± 0.30 | −2.08 ± 0.30 |
| Rocan 1 | CH1.40O0.50N0.04 | Duboc et al. (1999), Table 9 | −4.76 ± 0.25 | 1.29 ± 0.25 | −3.08 ± 0.33 |
| Rocan BUV 2 | CH1.56O0.59N0.05 | Duboc et al. (1999), Table 9 | −5.47 ± 0.29 | 1.36 ± 0.27 | −3.70 ± 0.37 |
| Scenedesnus obtusiusculus | CH1.64O0.44N0.11 | Duboc et al. (1999), Table 9 | −4.44 ± 0.24 | 1.42 ± 0.28 | −2.61 ± 0.32 |
| Selenastrum capricornutum | CH1.60O0.43N0.08 | Duboc et al. (1999), Table 9 | −4.41 ± 0.24 | 1.40 ± 0.28 | −2.60 ± 0.32 |