Table 1.
Abundance of putative cellulase domains and carbohydrate-binding modules detected in the rumen of Hu sheep
| Familya | ORF countsb | Domain countsc | Pfam moduled | Family IDe |
|---|---|---|---|---|
| GH1 | 145 | 151 | PF00232 | Glyco_hydro_1 |
| GH3 | 895 | 1075 |
PF00933 PF01915 |
Glyco_hydro_3 Glyco_hydro_3_C |
| GH5 | 436 | 444 | PF00150 | Cellulase |
| GH6 | 4 | 4 | PF01341 | Glyco_hydro_6 |
| GH8 | 54 | 59 | PF01270 | Glyco_hydro_8 |
| GH9 | 266 | 270 | PF00759 | Glyco_hydro_9 |
| GH30 | 68 | 86 |
PF02055 PF17189 PF14587 |
Glyco_hydro_30 Glyco_hydro_30C Glyco_hydr_30_2 |
| GH44 | 17 | 18 | PF12891 | Glyco_hydro_44 |
| GH45 | 10 | 11 | PF02015 | Glyco_hydro_45 |
| GH48 | 21 | 27 | PF02011 | Glyco_hydro_48 |
| GH116 | 5 | 7 |
PF12215 PF04685 |
Glyco_hydr_116 N DUF608 |
| CBM2 | 6 | 6 | PF00553 | CBM_2 |
| CBM3 | 44 | 47 | PF00942 | CBM_3 |
| CBM4, CBM9f | 66 | 67 | PF02018 | CBM_4_9 |
| CBM6 | 10 | 12 | PF03422 | CBM_6 |
| CBM10 | 10 | 23 | PF02013 | CBM_10 |
| CBM11 | 6 | 6 | PF03425 | CBM_11 |
| CBM35 | 4 | 7 | PF16990 | CBM_35 |
| CBM48 | 1 | 1 | PF02922 | CBM_48 |
aThe GHs (glycoside hydrolases) family and CBMs (carbohydrate-binding module) family are classified according to the CAZy database. GH families without a Pfam model are not shown
bNumber of candidate ORFs (open reading frames) containing at least one domain for a particular GHs or CBMs family
cNumber of CDs (catalytic domains) or CBMs modules for a particular family
dPfam model associated with the respective GHs or CBMs family
ePfam name of the catalytic domain associated with the respective CBMs family
fCBMs families that cannot be distinguished by Pfam model were combined