Key resources table.
| Reagent type (species) or resource |
Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Gene (Danio rerio) | bco1 | this paper | NCBI_Reference_Sequence:NM_001328495.1 | Amplified from cDNA |
| Gene (Danio rerio) | bco2b | this paper | NCBI_Reference_Sequence:NM_001040312.1 | Amplified from cDNA |
| Gene (Danio rerio) | bscl2l | this paper | NCBI_Reference_Sequence:NM_001013553.2 | Amplified from cDNA |
| Gene (Danio rerio) | slc2a11b | this paper | NCBI_Reference_Sequence:NM_001114430.1 | Amplified from cDNA |
| Gene (Danio rerio) | slc22a7a | this paper | NCBI_Reference_Sequence:M_001083861.1 | Amplified from cDNA |
| Gene (Danio rerio) | wu:fc46h12 | this paper | NCBI_Reference_Sequence:NM_001291347.1 | Amplified from cDNA |
| Gene (Danio rerio) | alx4a | this paper | NCBI_Reference_Sequence:XM_001340930 | Amplified from cDNA |
| Gene (Danio rerio) | alx4b | this paper | NCBI_Reference_Sequence:NM_001310078.1 | Amplified from cDNA |
| Gene (Danio rerio) | crip2 | this paper | NCBI_Reference_Sequence:NM_001005968.1 | Amplified from cDNA |
| Gene (Danio rerio) | defbl1 | this paper | NCBI_Reference_Sequence:NM_001081553.1 | Amplified from cDNA |
| Strain, strain background (Danio rerio) | Tg(tg:nVenus-v2a-nfnB) | PMID:25170046 | NA | NA |
| Strain, strain background (Danio rerio) | WT(ABb) | PMID:23737760 | NA | NA |
| Strain, strain background (Danio rerio) | Tg(aox5:palmEGFP)wp.rt22 | PMID:25170046 | NA | NA |
| Strain, strain background (Danio rerio) | Tg(tyrp1b:palm-mCherry)wp.rt11 | PMID:25170046 | NA | NA |
| Strain, strain background (Danio rerio) | Tg(−28.5Sox10:Cre)zf384 | Gift. PMID:23155370 | NA | NA |
| Strain, strain background (Danio rerio) | Tg(−3.5ubi:loxP-eGFP-loxP-mCherry)cz1701 | Gift. PMID:21138979 | NA | NA |
| Strain, strain background (Danio rerio) | Tg(tuba8l3:nEosFP)vp.rt17 | this paper | NA | NA |
| Strain, strain background (Danio rerio) | thraavp33rc1 | this paper | NA | NA |
| Strain, strain background (Danio rerio) | thrabvp31rc1 | this paper | NA | NA |
| Strain, strain background (Danio rerio) | thrbvp34rc1 | this paper | NA | NA |
| Strain, strain background (Danio rerio) | scarb1vp32rc1 | this paper | NA | NA |
| Strain, strain background (Danio rerio) | tyrvp35rc1 | this paper | NA | NA |
| Antibody | anti-Dig-AP, sheep polyclonal Fab fragments | Millipore-Sigma | SKU_millipore-sigma:11093274910 | 1:5000 overnight at 4°C |
| Antibody | anti-GFP rabbit polyclonal antibody | Thermo Fisher | CatalogNo_A-11122 | 1:1000 overnight at 4°C |
| Commercial assay or kit | Lysotracker Far Red | Thermo Fisher | CatalogNo_L12492 | 75 nM |
| Commercial assay or kit | Vybrant DyeCycle Violet stain | Thermo Fisher | CatalogNo_V35003 | 5 μM |
| Commercial assay or kit | Senescence associated β-Galactosidase Staining Kit | Cell Signaling Technologies | CatalogNo_9860 | NA |
| Chemical compound, drug | Metronidazole | Acros Organics | CatalogNo_210341000 | NA |
| Chemical compound, drug | Oil Red O | Millipore-Sigma | CatalogNo_3125–12 | 5 mM |
| Software, algorithm | Cellranger | 10X Genomics | v2.0.2 | |
| Software, algorithm | Monocle | NA | v2.9.0 and v2.99.1 | https://github.com/cole-trapnell-lab/monocle-release.git |